Publications

2023

Update on Microbiota-derived therapies for recurrent Clostridioides difficile infections, 2023.

Benech N, Barbut F, Fitzpatrick F, Krutova M, Davies K, Druart C, Cordaillat-Simmons M, Heritage J, Guery B, Kuijper E, ESGCD and ESGHAMI

Clin Microbiol Infect. 2023 Dec 13

Core genome multilocus sequence typing of Clostridioides difficile to investigate transmission in the hospital setting.

Filippidis P, Senn L, Poncet F, Grandbastien B, Prod'hom G, Greub G, Guery B, Blanc DS

Eur J Clin Microbiol Infect Dis. 2023 Dec;42(12):1469-1476

Plasmatic HIV-1 soluble gp120 is associated with correlates of immune dysfunction and inflammation in ART-treated individuals with undetectable viremia.

Benlarbi M, Richard J, Bourassa C, Tolbert WD, Chartrand-Lefebvre C, Gendron-Lepage G, Sylla M, El-Far M, Messier-Peet M, Guertin C, Turcotte I, Fromentin R, Verly MM, Prévost J, Clark A, Mothes W, Kaufmann DE, Maldarelli F, Chomont N, Bégin P, Tremblay C

J Infect Dis. 2023 Nov 30

Plasma SARS-CoV-2 RNA elimination and RAGE kinetics distinguish COVID-19 severity.

Deng X, Gantner P, Forestell J, Pagliuzza A, Brunet-Ratnasingham E, Durand M, Kaufmann DE, Chomont N, Craig M

Clin Transl Immunology. 2023;12(11):e1468

Population Pharmacokinetic Analysis of Doravirine in Real-World People with HIV.

Thoueille P, Delarive L, Cavassini M, Buclin T, Decosterd LA, Marzolini C, Girardin FR, Guidi M, Swiss HIV Cohort Study

Br J Clin Pharmacol. 2023 Nov 23

Dysregulated monocyte-derived macrophage response to Group B Streptococcus in newborns.

Ravi D, Ntinopoulou E, Guetta N, Weier M, Vogel V, Spellerberg B, Sendi P, Gremlich S, Roger T, Giannoni E

Front Immunol. 2023;14:1268804

Occurrence of Aspergillus fumigatus azole resistance in soils from Switzerland.

Schürch S, Gindro K, Schnee S, Dubuis PH, Codina JM, Wilhelm M, Riat A, Lamoth F, Sanglard D

Med Mycol. 2023 Nov 1

Diversity and evolution of an abundant ICEclc family of integrative and conjugative elements in Pseudomonas aeruginosa.

Benigno V, Carraro N, Sarton-Lohéac G, Romano-Bertrand S, Blanc DS, van der Meer JR

mSphere. 2023 Oct 30:e0051723

[HIV self-tests in community pharmacies Inventory and practice recommendations for interprofessional collaborations].

Rousseau M, Solh Dost S, Santos B, Gauthier R, Cavassini M, Calmy A, Schneider M

Rev Med Suisse. 2023 Oct 25;19(847):2017-2020

Re: 'The effect of antibiotic therapy for Clostridioides difficile infection on mortality and other patient-relevant outcomes' by Stabholz et al.

van Prehn J, Skinner AM, Krutova M, Guery B

Clin Microbiol Infect. 2023 Oct 20

Lymph node dendritic cells harbor inducible replication-competent HIV despite years of suppressive ART.

Banga R, Procopio FA, Lana E, Gladkov GT, Roseto I, Parsons EM, Lian X, Armani-Tourret M, Bellefroid M, Gao C, Kauzlaric A, Foglierini M, Alfageme-Abello O, Sluka SHM, Munoz O, Mastrangelo A, Fenwick C, Muller Y, Mkindi CG, Daubenberger C, Cavassini M, Tr

Cell Host Microbe. 2023 Oct 11;31(10):1714-1731.e9

Long-term quantitative hepatitis B surface antigen (HBsAg) trajectories in persons with and without HBsAg loss on tenofovir-containing antiretroviral therapy.

Begré L, Boyd A, Salazar-Vizcaya L, Suter-Riniker F, Béguelin C, Rockstroh JK, Günthard HF, Calmy A, Cavassini M, Stöckle M, Schmid P, Bernasconi E, Levrero M, Zoulim F, Wandeler G, Rauch A, Swiss HIV Cohort Study (SHCS)

HIV Med. 2023 Oct 10

Infections after chimeric antigen receptor (CAR)-T-cell therapy for hematologic malignancies.

Kampouri E, Little JS, Rejeski K, Manuel O, Hammond SP, Hill JA

Transpl Infect Dis. 2023 Oct 3:e14157

Impact of COVID-19 on long-term lung function in lung transplant recipients: A single-center retrospective cohort study.

Touilloux B, Papadimitriou-Olivgeris M, Bongard C, Mansouri N, Ioakeim F, Manuel O, Koutsokera A, Aubert JD, Casutt A

Transpl Infect Dis. 2023 Oct;25(5):e14151

The potential clinical value of pairing procalcitonin and lung ultrasonography to guide antibiotic therapy in patients with community-acquired pneumonia: a narrative review.

Bessat C, Boillat-Blanco N, Albrich WC

Expert Rev Respir Med. 2023 Sep 28:1-9

COVID-19 after hematopoietic cell transplantation and chimeric antigen receptor (CAR)-T-cell therapy.

Kampouri E, Hill JA, Dioverti V

Transpl Infect Dis. 2023 Sep 28:e14144

Atypical imaging patterns during lung invasive mould diseases: lessons for clinicians.

Casutt A, Lamoth F, Lortholary O, Prior JO, Tonglet A, Manuel O, Bergeron A, Beigelman-Aubry C

Eur Respir Rev. 2023 Sep 30;32(169)

Validation of sTREM-1 and IL-6 based algorithms for outcome prediction of COVID-19.

Van Singer M, Brahier T, Koch J, Hugli PO, Weckman AM, Zhong K, Kain TJ, Leligdowicz A, Bernasconi E, Ceschi A, Parolari S, Vuichard-Gysin D, Kain KC, Albrich WC, Boillat-Blanco N

BMC Infect Dis. 2023 Sep 26;23(1):630

Immune monitoring-guided vs fixed duration of antiviral prophylaxis against cytomegalovirus in solid-organ transplant recipients. A Multicenter, Randomized Clinical Trial.

Manuel O, Laager M, Hirzel C, Neofytos D, Walti LN, Hoenger G, Binet I, Schnyder A, Stampf S, Koller M, Mombelli M, Kim MJ, Hoffmann M, Koenig K, Hess C, Burgener AV, Cippà PE, Hübel K, Mueller TF, Sidler D, Dahdal S, Suter-Riniker F, Villard J, Zbinden A

Clin Infect Dis. 2023 Sep 22

Association of antimicrobial perioperative prophylaxis with cefuroxime plus metronidazole or amoxicillin/clavulanic acid and surgical site infections in colorectal surgery.

Stavropoulou E, Atkinson A, Eisenring MC, Fux CA, Marschall J, Senn L, Troillet N

Antimicrob Resist Infect Control. 2023 Sep 19;12(1):105

Humoral Responses Elicited after a Fifth Dose of SARS-CoV-2 mRNA Bivalent Vaccine.

Tauzin A, Beaudoin-Bussières G, Benlarbi M, Nayrac M, Bo Y, Gendron-Lepage G, Medjahed H, Perreault J, Gokool L, Arlotto P, Morrisseau C, Tremblay C, Kaufmann DE, Martel-Laferrière V, Levade I, Côté M, Bazin R, Finzi A

Viruses. 2023 Sep 15;15(9)

Spontaneous HIV expression during suppressive ART is associated with the magnitude and function of HIV-specific CD4(+) and CD8(+) T cells.

Dubé M, Tastet O, Dufour C, Sannier G, Brassard N, Delgado GG, Pagliuzza A, Richard C, Nayrac M, Routy JP, Prat A, Estes JD, Fromentin R, Chomont N, Kaufmann DE

Cell Host Microbe. 2023 Sep 13;31(9):1507-1522.e5

Prevalence of HIV-1 drug resistance mutations in proviral DNA in the Swiss HIV Cohort Study, a retrospective study from 1995 to 2018.

Jaha B, Schenkel CD, Jörimann L, Huber M, Zaheri M, Neumann K, Leemann C, Calmy A, Cavassini M, Kouyos RD, Günthard HF, Metzner KJ, Swiss HIV Cohort Study

J Antimicrob Chemother. 2023 Sep 5;78(9):2323-2334

A second update on mapping the human genetic architecture of COVID-19.

COVID-19 Host Genetics Initiative

Nature. 2023 Sep;621(7977):E7-E26

Update of recommendations for the management of COVID-19 in patients with haematological malignancies, haematopoietic cell transplantation and CAR T therapy, from the 2022 European Conference on Infections in Leukaemia (ECIL 9).

Cesaro S, Mikulska M, Hirsch HH, Styczynski J, Meylan S, Cordonnier C, Navarro D, von Lilienfeld-Toal M, Mehra V, Marchesi F, Besson C, Masculano RC, Beutel G, Einsele H, Maertens J, de la Camara R, ECIL 9, Ljungman P, Pagano L

Leukemia. 2023 Sep;37(9):1933-1938

Which trial do we need? A sequential multiple assignment randomized trial to determine the optimal Clostridioides difficile treatment sequence.

van Prehn J, van Werkhoven CH, Skinner AM, Guery B, Dubberke ER, Kuijper EJ

Clin Microbiol Infect. 2023 Aug 29

Swiss expert opinion: current approaches in faecal microbiota transplantation in daily practice.

Rossier L, Matter C, Burri E, Galperine T, Hrúz P, Juillerat P, Schoepfer A, Vavricka SR, Zahnd N, Décosterd N, Seibold F

Swiss Med Wkly. 2023 Aug 25;153:40100

Post-COVID symptoms are associated with endotypes reflecting poor inflammatory and hemostatic modulation.

An AY, Baghela A, Zhang PGY, Blimkie TM, Gauthier J, Kaufmann DE, Acton E, Lee AHY, Levesque RC, Hancock REW

Front Immunol. 2023;14:1243689

Antiretroviral drug exposure and response in obese and morbidly obese people with HIV: a study combining modelling and Swiss HIV Cohort data.

Berton M, Bettonte S, Stader F, Decosterd L, Tarr PE, Livio F, Cavassini M, Braun DL, Kusejko K, Hachfeld A, Bernasconi E, Calmy A, Schmid P, Battegay M, Marzolini C

Clin Infect Dis. 2023 Aug 21

Lung and sinus fungal infection imaging in immunocompromised patients.

Lamoth F, Prakash K, Beigelman-Aubry C, Baddley JW

Clin Microbiol Infect. 2023 Aug 20

Temporal changes in fecal microbiota of patients infected with COVID-19: a longitudinal cohort.

Galperine T, Choi Y, Pagani JL, Kritikos A, Papadimitriou-Olivgeris M, Méan M, Scherz V, Opota O, Greub G, Guery B, Bertelli C, RegCOVID Study Group

BMC Infect Dis. 2023 Aug 18;23(1):537

Immunogenicity of High-Dose vs. MF59-adjuvanted vs. Standard Influenza Vaccine in Solid Organ Transplant Recipients: The STOP-FLU trial.

Mombelli M, Neofytos D, Huynh-Do U, Sánchez-Céspedes J, Stampf S, Golshayan D, Dahdal S, Stirnimann G, Schnyder A, Garzoni C, Venzin RM, Magenta L, Schönenberger M, Walti L, Hirzel C, Munting A, Dickenmann M, Koller M, Aubert JD, Steiger J, Pascual M, Mue

Clin Infect Dis. 2023 Aug 16

Plasmatic HIV-1 soluble gp120 is associated with immune dysfunction and inflammation in ART-treated individuals with undetectable viremia.

medRxiv. 2023 Aug 16

Sexual Behaviour and STI Incidence in Sexually Active MSM Living With HIV in Times of COVID-19.

Mugglin C, Hamusonde K, Salazar-Vizcaya L, Kusejko K, Nicca D, Haerry D, Braun DL, Stoeckle M, Kouyos R, Calmy A, Cavassini M, Cipriani M, Bernasconi E, Rauch A, Hachfeld A, Swiss HIV Cohort Study (SHCS)

Open Forum Infect Dis. 2023 Aug;10(8):ofad399

Mycobacterium tuberculosis infection associated immune perturbations correlate with antiretroviral immunity.

Tepekule B, Jörimann L, Schenkel CD, Opitz L, Tschumi J, Wolfensberger R, Neumann K, Kusejko K, Zeeb M, Boeck L, Kälin M, Notter J, Furrer H, Hoffmann M, Hirsch HH, Calmy A, Cavassini M, Labhardt ND, Bernasconi E, Metzner KJ, Braun DL, Günthard HF, Kouyos

bioRxiv. 2023 Jul 18

Portal-Mesenteric Suppurative Emphysematous Pylephlebitis: A Case Report.

Cheikh Youssef R, Jacques JM, Zahir S, Roger T, Landen S

Cureus. 2023 Jul;15(7):e41693

Risk of embolic events before and after antibiotic treatment initiation among patients with left-side infective endocarditis.

Papadimitriou-Olivgeris M, Guery B, Ianculescu N, Auberson D, Tozzi P, Kirsch M, Monney P

Infection. 2023 Jul 4

Clinically relevant bidirectional drug-drug interaction between midostaurin and voriconazole.

Haefliger D, Marzolini C, Lamoth F, Pabst T, Buclin T, Livio F

Br J Clin Pharmacol. 2023 Jul;89(7):2304-2308

Cytomegalovirus in donors for fecal microbiota transplantation, the phantom menace?

Galpérine T, Engelmann I, Hantz S, Postil D, Dewilde A, Deplanque D, Martin R, Labreuche J, Lazrek M, Somers S, Ribot E, Alain S

PLoS One. 2023;18(6):e0287847

Performance of the beta-glucan test for the diagnosis of invasive fusariosis and scedosporiosis: a meta-analysis.

Lamoth F, Nucci M, Fernandez-Cruz A, Azoulay E, Lanternier F, Bremerich J, Einsele H, Johnson E, Lehrnbecher T, Mercier T, Porto L, Verweij PE, White L, Maertens J, Alanio A, 9th European Conference on Infections in Leukemia (ECIL-9)

Med Mycol. 2023 Jun 28

Sepsis awareness and knowledge amongst nurses, physicians and paramedics of a tertiary care center in Switzerland: A survey-based cross-sectional study.

Regina J, Le Pogam MA, Niemi T, Akrour R, Pepe S, Lehn I, Wasserfallen JB, Calandra T, Meylan S

PLoS One. 2023;18(6):e0285151

Hear My Voice: involving patients in Clostridioides difficile infection research.

Strawbridge J, Heritage J, Krutova M, Guery B, Davies K, Fitzpatrick F, Freeman J

Clin Microbiol Infect. 2023 Jun 27

Barriers and facilitators to implementation of point-of-care lung ultrasonography in a tertiary centre in Benin: a qualitative study among general physicians and pneumologists.

Suttels V, Guedes Da Costa S, Garcia E, Brahier T, Hartley MA, Agodokpessi G, Wachinou P, Fasseur F, Boillat-Blanco N

BMJ Open. 2023 Jun 26;13(6):e070765

Viral-associated Pulmonary Aspergillosis: Have We Finally Overcome the Debate of Colonization Versus Infection?

Albrich WC, Lamoth F

Am J Respir Crit Care Med. 2023 Jun 22

[Mindfulness meditation in somatic medicine. A management tool for physical and psychological pain].

Stanic J, Jackson-Perry D, Courvoisier C, Gaignard ME, Dunker Scheuner D, Jeker Frésard E, Grabherr L, Berna C

Rev Med Suisse. 2023 Jun 21;19(832):1228-1233

'Which trial do we need? Culture of preservation fluid in abdominal-organ transplant recipients' Author's reply.

Manuel O, van den Bogaart L, Mueller NJ, Neofytos D

Clin Microbiol Infect. 2023 Jun 19

Predicting Optimal Antimalarial Drug Combinations from a Standardized Plasmodium falciparum Humanized Mouse Model.

Demarta-Gatsi C, Andenmatten N, Jiménez-Díaz MB, Gobeau N, Cherkaoui-Rabti MH, Fuchs A, Díaz P, Berja S, Sánchez R, Gómez H, Ruiz E, Sainz P, Salazar E, Gil-Merino R, Mendoza LM, Eguizabal C, Leroy D, Moehrle JJ, Tornesi B, Angulo-Barturen I

Antimicrob Agents Chemother. 2023 Jun 15;67(6):e0157422

Impact of thoracoabdominal imaging on diagnosis and management in patients with suspected infective endocarditis.

Papadimitriou-Olivgeris M, Monney P, Rotzinger DC, Kamani CH, Fahrni G, Prior JO, Ianculescu N, Messaoudi Y, Tozzi P, Kirsch M, Guery B

Eur J Intern Med. 2023 Jun 15

An Unusual Cause of Severe Granulomatous Hepatitis and Jaundice.

Coukos A, Uldry E, Meylan S, Schmidt S, Fasquelle F, Sempoux C, Fraga M

Am J Gastroenterol. 2023 Jun 13

Population pharmacokinetic modelling to characterize the effect of chronic kidney disease on tenofovir exposure after tenofovir alafenamide administration.

Thoueille P, Alves Saldanha S, Desfontaine V, Kusejko K, Courlet P, Andre P, Cavassini M, Decosterd LA, Buclin T, Guidi M, Swiss HIV Cohort Study

J Antimicrob Chemother. 2023 Jun 1;78(6):1433-1443

Viral suppression and retention in HIV care during the postpartum period among women living with HIV: a longitudinal multicenter cohort study.

Paioni P, Aebi-Popp K, Martinez de Tejada B, Rudin C, Bernasconi E, Braun DL, Kouyos R, Wagner N, Crisinel PA, Güsewell S, Darling KEA, Duppenthaler A, Baumann M, Polli C, Fischer T, Kahlert CR, Swiss HIV Cohort Study (SHCS) and the Swiss Mother and Child

Lancet Reg Health Eur. 2023 Aug;31:100656

Understanding the decline of incident, active tuberculosis in people with HIV in Switzerland.

Zeeb M, Tepekule B, Kusejko K, Reiber C, Kälin M, Bartl L, Notter J, Furrer H, Hoffmann M, Hirsch HH, Calmy A, Cavassini M, Labhardt ND, Bernasconi E, Braun DL, Günthard HF, Kouyos RD, Nemeth J, Swiss HIV Cohort Study

Clin Infect Dis. 2023 May 31

Regulation of inflammation and protection against invasive pneumococcal infection by the long pentraxin PTX3.

Porte R, Silva-Gomes R, Theroude C, Parente R, Asgari F, Sironi M, Pasqualini F, Valentino S, Asselta R, Recordati C, Monari MN, Doni A, Inforzato A, Rodriguez-Gallego C, Obando I, Colino E, Bottazzi B, Mantovani A

Elife. 2023 May 24;12

The role of early defervescence in ruling out infective endocarditis: a cohort study.

Stavropoulou E, Guery B, Ianculescu N, Tozzi P, Kirsch M, Monney P, Papadimitriou-Olivgeris M

Clin Microbiol Infect. 2023 May 23

Exploration of the Acceptance of the Use of Procalcitonin Point-of-Care Testing and Lung Ultrasonography by General Practitioners to Decide on Antibiotic Prescriptions for Lower Respiratory Infections: A Qualitative Study.

Geis D, Canova N, Lhopitallier L, Kronenberg A, Meuwly JY, Senn N, Mueller Y, Fasseur F, Boillat-Blanco N

BMJ Open. 2023 May 11;13(5):e063922

Novel Approaches in the Management of Mucormycosis.

Lamoth F

Curr Fungal Infect Rep. 2023 May 8:1-10

Bacteremia During the First Year After Solid Organ Transplantation: An Epidemiological Update.

Neofytos D, Stampf S, Hoessly LD, D'Asaro M, Tang GN, Boggian K, Hirzel C, Khanna N, Manuel O, Mueller NJ, Van Delden C, Swiss Transplant Cohort Study

Open Forum Infect Dis. 2023 Jun;10(6):ofad247

Beyond Undetectable: Modeling the Clinical Benefit of Improved Antiretroviral Adherence in Persons With Human Immunodeficiency Virus With Virologic Suppression.

Castillo-Mancilla JR, Morrow M, Hunt PW, Schnittman SR, Phillips AN, Baker JV, Haberer JE, Janeiro MJ, Aragao F, Cohen C, Musinguzi N, Brown TT, Cavassini M, Glass TR, Serrano-Villar S, Mawhinney S, Siedner M

Open Forum Infect Dis. 2023 May;10(5):ofad230

The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata.

Neves A, Walther D, Martin-Campos T, Barbie V, Bertelli C, Blanc D, Bouchet G, Erard F, Greub G, Hirsch HH, Huber M, Kaiser L, Leib SL, Leuzinger K, Lazarevic V, Mäusezahl M, Molina J, Neher RA, Perreten V, Ramette A, Roloff T, Schrenzel J, Seth-Smith HMB

Microb Genom. 2023 May;9(5)

Epigenetic ageing accelerates before antiretroviral therapy and decelerates after viral suppression in people with HIV in Switzerland: a longitudinal study over 17 years.

Schoepf IC, Esteban-Cantos A, Thorball CW, Rodés B, Reiss P, Rodríguez-Centeno J, Riebensahm C, Braun DL, Marzolini C, Seneghini M, Bernasconi E, Cavassini M, Buvelot H, Thurnheer MC, Kouyos RD, Fellay J, Günthard HF, Arribas JR, Ledergerber B, Tarr PE, S

Lancet Healthy Longev. 2023 May;4(5):e211-e218

Effect of SLCO1B1 c.521T>C polymorphism on the lipid response to statins in people living with HIV on a boosted protease inhibitor containing regimen.

Marzolini C, Cavassini M, Braun DL, Hachfeld A, Bernasconi E, Calmy A, Schmid P, Battegay M, Elzi L, Swiss HIV Cohort Study

Br J Clin Pharmacol. 2023 Apr 26

[Multidisciplinary assessment and management of neurocognitive complaints in people living with HIV].

Damas J, Berney A, Bieler-Aeschlimann M, Cavassini M, Du Pasquier R

Rev Med Suisse. 2023 Apr 26;19(824):797-799

Dry alginate beads for fecal microbiota transplantation: From model strains to fecal samples.

Rakotonirina A, Galperine T, Audry M, Kroemer M, Baliff A, Carrez L, Sadeghipour F, Schrenzel J, Guery B, Allémann E

Int J Pharm. 2023 Apr 17;639:122961

Circulating proteins to predict COVID-19 severity.

Su CY, Zhou S, Gonzalez-Kozlova E, Butler-Laporte G, Brunet-Ratnasingham E, Nakanishi T, Jeon W, Morrison DR, Laurent L, Afilalo J, Afilalo M, Henry D, Chen Y, Carrasco-Zanini J, Farjoun Y, Pietzner M, Kimchi N, Afrasiabi Z, Rezk N, Bouab M, Petitjean L,

Sci Rep. 2023 Apr 17;13(1):6236

[2023 update on alveolar echinococcosis].

Gauthiez E, Uldry E, Coste AT, Prior J, Cavassini M, Munting A

Rev Med Suisse. 2023 Apr 12;19(822):708-712

Solid organ transplantation: Need of a new paradigm integrating biological sex.

Rello J, Manuel O, Pont T

Eur J Intern Med. 2023 Apr 12

Le retour d’une vieille compagne.

Kaiser L, Kaufmann D

Rev Med Suisse. 2023 Apr 12;19(822):699-700

[Innovative responses to HIV-related issues in a university hospital in Switzerland].

Cobos Manuel I, Courvoisier C, Rhis MF, Depallens R, Buvelot Corthesy C, Muggli E, Cavassini M, Jackson-Perry D

Rev Med Suisse. 2023 Apr 12;19(822):732-735

Editorial: Beneficial and pathological roles of myeloid cells during COVID-19.

Sharma L, Sengupta S, Roger T

Front Immunol. 2023;14:1194826

Long-Term Consequences of COVID-19: A 1-Year Analysis.

Bamps L, Armenti JP, Bojan M, Grandbastien B, von Garnier C, Du Pasquier R, Desgranges F, Papadimitriou-Olivgeris M, Alberio L, Preisig M, Schwitter J, Guery B, The RegCOVID Study Group

J Clin Med. 2023 Apr 3;12(7)

Vaccine-Preventable Infections Among Solid Organ Transplant Recipients in Switzerland.

Walti LN, Mugglin C, Mombelli M, Manuel O, Hirsch HH, Khanna N, Mueller NJ, Berger C, Boggian K, Garzoni C, Neofytos D, van Delden C, Mäusezahl M, Hirzel C, Swiss Transplant Cohort Study

JAMA Netw Open. 2023 Apr 3;6(4):e2310687

Successful implementation of new Swiss recommendations on breastfeeding of infants born to women living with HIV.

Crisinel PA, Kusejko K, Kahlert CR, Wagner N, Beyer LS, De Tejada BM, Hösli I, Vasconcelos MK, Baumann M, Darling K, Duppenthaler A, Rauch A, Paioni P, Aebi-Popp K

Eur J Obstet Gynecol Reprod Biol. 2023 Apr;283:86-89

Role of cerebral imaging on diagnosis and management in patients with suspected infective endocarditis.

Papadimitriou-Olivgeris M, Guery B, Ianculescu N, Dunet V, Messaoudi Y, Pistocchi S, Tozzi P, Kirsch M, Monney P

Clin Infect Dis. 2023 Mar 31

Which trial do we need? Culture of preservation fluid in abdominal organ transplant recipients.

Manuel O, van den Bogaart L, Mueller NJ, Neofytos D

Clin Microbiol Infect. 2023 Mar 17

Temsavir blocks the immunomodulatory activities of HIV-1 soluble gp120.

Richard J, Prévost J, Bourassa C, Brassard N, Boutin M, Benlarbi M, Goyette G, Medjahed H, Gendron-Lepage G, Gaudette F, Chen HC, Tolbert WD, Smith AB 3rd, Pazgier M, Dubé M, Clark A, Mothes W, Kaufmann DE, Finzi A

Cell Chem Biol. 2023 Mar 17

Cerebrospinal fluid HIV-1 escape in patients with neurocognitive symptoms: pooled data from a neuro-HIV platform and the NAMACO study.

Filippidis P, Damas J, Viala B, Assal F, Tshikung ON, Tarr P, Derfuss T, Oberholzer M, Jelcic I, Hundsberger T, Sacco L, Cavassini M, Du Pasquier R, Darling KEA, and the NAMACO study group, Swiss HIV Cohort Study

J Acquir Immune Defic Syndr. 2023 Mar 15

On-demand, hospital-based, severe acute respiratory coronavirus virus 2 (SARS-CoV-2) genomic epidemiology to support nosocomial outbreak investigations: A prospective molecular epidemiology study.

Benoit P, Jolicoeur G, Point F, Soucy C, Normand K, Morency-Potvin P, Gagnon S, Kaufmann DE, Tremblay C, Coutlée F, Harrigan PR, Hardy I, Smith M, Savard P, Grandjean Lapierre S

Antimicrob Steward Healthc Epidemiol. 2023;3(1):e45

One for all, all for one: neuro-HIV multidisciplinary platform for the assessment and management of neurocognitive complaints in people living with HIV.

Damas J, Darling KEA, Bidlingmeyer P, Nadin-Debluë I, Bieler M, Vollino L, Sokolov AA, Berney A, Maccaferri G, Filippidis P, Viala B, Granziera C, Dunet V, Du Pasquier R, Cavassini M

HIV Med. 2023 Mar 8

Prospective compliance assessment of surgical site infection prevention measures in colorectal surgery.

Deslarzes P, Jurt J, Hübner M, Hahnloser D, Clerc D, Senn L, Demartines N, Grass F

BJS Open. 2023 Mar 7;7(2)

Rectal shedding of monkeypox virus in a patient coinfected with Chlamydia trachomatis and Neisseria gonorrhoeae: a case report.

Desgranges F, Glampedakis E, Christinet V, Encarnação S, Fernandes C, Greub G, Opota O, Cavassini M

J Med Case Rep. 2023 Mar 6;17(1):94

Pulse Oximetry as an Aid to Rule Out Pneumonia among Patients with a Lower Respiratory Tract Infection in Primary Care.

Fischer C, Knüsli J, Lhopitallier L, Tenisch E, Meuwly MG, Douek P, Meuwly JY, D'Acremont V, Kronenberg A, Locatelli I, Mueller Y, Senn N, Boillat-Blanco N

Antibiotics (Basel). 2023 Mar 2;12(3)

Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1.

Balakrishna S, Loosli T, Zaheri M, Frischknecht P, Huber M, Kusejko K, Yerly S, Leuzinger K, Perreau M, Ramette A, Wymant C, Fraser C, Kellam P, Gall A, Hirsch HH, Stoeckle M, Rauch A, Cavassini M, Bernasconi E, Notter J, Calmy A, Günthard HF, Metzner KJ,

J Antimicrob Chemother. 2023 Mar 2;78(3):656-664

Predictors of mortality of Staphylococcus aureus bacteremia among patients hospitalized in a Swiss University Hospital and the role of early source control; a retrospective cohort study.

Papadimitriou-Olivgeris M, Caruana G, Senn L, Guery B

Eur J Clin Microbiol Infect Dis. 2023 Mar;42(3):347-357

The effect of sex inequality on solid organ transplantation: A systematic review and meta-analysis.

Tejada S, Martinez-Reviejo R, Nogueira TA, Gómez A, Pont T, Liao X, Zhang Z, Manuel O, Rello J

Eur J Intern Med. 2023 Mar;109:58-67

Clinical significance of concomitant bacteriuria in patients with Staphylococcus aureus bacteraemia.

Papadimitriou-Olivgeris M, Jacot D, Senn L, Guery B

Eur J Clin Microbiol Infect Dis. 2023 Mar;42(3):379-382

Novel Therapeutic Approaches to Invasive Candidiasis: Considerations for the Clinician.

Lamoth F

Infect Drug Resist. 2023;16:1087-1097

Swiss Sepsis National Action Plan: A coordinated national action plan to stop sepsis-related preventable deaths and to improve the support of people affected by sepsis in Switzerland.

Schlapbach LJ, Zimmermann EA, Meylan S, Stocker M, Suter PM, Jakob SM, National Action Plan Working Group OBOTSS

Front Med (Lausanne). 2023;10:1114546

Should we treat Blastocystis sp.? A double-blind placebo-controlled randomized pilot trial.

Cobuccio LG, Laurent M, Gardiol C, Wampfler R, Poppert S, Senn N, Eperon G, Genton B, Locatelli I, de Vallière S

J Travel Med. 2023 Feb 18;30(1)

A Functional Polymorphism in IL-1B Is Associated With Immune Reconstitution Inflammatory Syndrome of Chronic Disseminated Candidiasis.

Rammaert B, Bochud PY, Brunel AS, Wojtowicz A, Candon S, Gallego Hernanz MP, Lortholary O

Open Forum Infect Dis. 2023 Mar;10(3):ofad078

Overruling of Procalcitonin-Guided Antibiotics for Lower Respiratory Tract Infections in Primary Care: Ancillary Study of a Randomized Controlled Trial.

Knüsli J, Lhopitallier L, Kronenberg A, Meuwly JY, Opota O, Perrenoud MA, Page MA, Kain KC, Mamin A, D'Acremont V, Senn N, Mueller Y, Locatelli I, Boillat-Blanco N

Antibiotics (Basel). 2023 Feb 12;12(2)

A third SARS-CoV-2 mRNA vaccine dose in people receiving hemodialysis overcomes B cell defects but elicits a skewed CD4(+) T cell profile.

Sannier G, Nicolas A, Dubé M, Marchitto L, Nayrac M, Tastet O, Chatterjee D, Tauzin A, Lima-Barbosa R, Laporte M, Cloutier R, Sreng Flores AM, Boutin M, Gong SY, Benlarbi M, Ding S, Bourassa C, Gendron-Lepage G, Medjahed H, Goyette G, Brassard N, Delgado

Cell Rep Med. 2023 Feb 7:100955

Preemptive therapy versus universal prophylaxis: Time for reconciliation?

Kampouri E, Manuel O

Transpl Infect Dis. 2023 Feb 3:e14014

Comparison of five different risk scores to predict incident type 2 diabetes in the Swiss HIV cohort study.

Blondet F, Kraege V, Matthias C, Fernandez JD, Vollenweider P, Wandeler G, Hoffman M, Calmy A, Stoeckle M, Bernasconi E, Hasse B, Marques-Vidal P, Mean M, Swiss HIV Cohort Study

AIDS. 2023 Feb 3

Outcomes of SARS-CoV-2 infection among lung transplant recipients: A single center retrospective study.

Casutt A, Papadimitriou-Olivgeris M, Ioakeim F, Aubert JD, Manuel O, Koutsokera A

Transpl Infect Dis. 2023 Feb;25(1):e14007

A narrative review of the intermediate category of the antimicrobial susceptibility test: relation with dosing and possible impact on antimicrobial stewardship.

Yusuf E, Zeitlinger M, Meylan S

J Antimicrob Chemother. 2023 Feb 1;78(2):338-345

Faecal microbiota transplantation for first and second episodes of Clostridioides difficile infection.

Krutova M, Davis K, Guery B, Barbut F

Lancet Gastroenterol Hepatol. 2023 Feb;8(2):111-112

Author Correction: Transmission of trained immunity and heterologous resistance to infections across generations.

Katzmarski N, Domínguez-Andrés J, Cirovic B, Renieris G, Ciarlo E, Le Roy D, Lepikhov K, Kattler K, Gasparoni G, Händler K, Theis H, Beyer M, van der Meer JWM, Joosten LAB, Walter J, Schultze JL, Roger T, Giamarellos-Bourboulis EJ, Schlitzer A, Netea MG

Nat Immunol. 2023 Feb;24(2):371-372

[News in HIV infection, long-acting injectable treatments].

Nawej Tshikung O, Segeral O, Cavassini M, Calmy A

Rev Med Suisse. 2023 Feb 1;19(812):243-249

Spike recognition and neutralization of SARS-CoV-2 Omicron subvariants elicited after the third dose of mRNA vaccine.

Tauzin A, Nicolas A, Ding S, Benlarbi M, Medjahed H, Chatterjee D, Dionne K, Gong SY, Gendron-Lepage G, Bo Y, Perreault J, Goyette G, Gokool L, Arlotto P, Morrisseau C, Tremblay C, Martel-Laferrière V, De Serres G, Levade I, Kaufmann DE, Côté M, Bazin R,

Cell Rep. 2023 Jan 31;42(1):111998

Leukocyte Count and Coronary Artery Disease Events in People with HIV: A Longitudinal Study.

Avery EF, Kleynhans JN, Ledergerber B, Schoepf IC, Thorball CW, Kootstra NA, Reiss P, Ryom L, Braun DL, Thurnheer MC, Marzolini C, Seneghini M, Bernasconi E, Cavassini M, Buvelot H, Kouyos RD, Fellay J, Günthard HF, Tarr PE, Swiss HIV Cohort Study

Clin Infect Dis. 2023 Jan 23

Humoral Responses against BQ.1.1 Elicited after Breakthrough Infection and SARS-CoV-2 mRNA Vaccination.

Tauzin A, Benlarbi M, Medjahed H, Grégoire Y, Perreault J, Gendron-Lepage G, Gokool L, Morrisseau C, Arlotto P, Tremblay C, Kaufmann DE, Martel-Laferrière V, Levade I, Côté M, De Serres G, Bazin R, Finzi A

Vaccines (Basel). 2023 Jan 21;11(2)

An extended SARS-CoV-2 mRNA vaccine prime-boost interval enhances B cell immunity with limited impact on T cells.

Nicolas A, Sannier G, Dubé M, Nayrac M, Tauzin A, Painter MM, Goel RR, Laporte M, Gendron-Lepage G, Medjahed H, Williams JC, Brassard N, Niessl J, Gokool L, Morrisseau C, Arlotto P, Tremblay C, Martel-Laferrière V, Finzi A, Greenplate AR, Wherry EJ, Kaufm

iScience. 2023 Jan 20;26(1):105904

Alveolar echinococcosis in solid organ transplant recipients: a case series from two national cohorts.

Marquis B, Demonmerot F, Richou C, Thiéfin G, Millon L, Wallon M, Vuitton DA, Grall-Jezequel A, Grenouillet F, Epaulard O, Gervais P, Manuel O, Bresson-Hadni S, Swiss Transplant Cohort Study, FrancEchino Network

Parasite. 2023;30:9

Antibody-induced erythrophagocyte reprogramming of Kupffer cells prevents anti-CD40 cancer immunotherapy-associated liver toxicity.

Pfefferlé M, Dubach IL, Buzzi RM, Dürst E, Schulthess-Lutz N, Baselgia L, Hansen K, Imhof L, Koernig S, Le Roy D, Roger T, Humar R, Schaer DJ, Vallelian F

J Immunother Cancer. 2023 Jan;11(1)

2022

Impact of selective reporting of antibiotic susceptibility testing results on meropenem prescriptions for the treatment of Pseudomonas aeruginosa infections after 2020 EUCAST criteria update: an observational study in a university hospital.

Munting A, Damas J, Viala B, Prod'hom G, Guery B, Senn L

Antimicrob Resist Infect Control. 2022 Dec 30;11(1):165

Factors Influencing the Implementation of Antimicrobial Stewardship in Primary Care: A Narrative Review.

Suttels V, Van Singer M, Clack LC, Plüss-Suard C, Niquille A, Mueller Y, Boillat Blanco N

Antibiotics (Basel). 2022 Dec 24;12(1)

ImmunoSep (Personalised Immunotherapy in Sepsis) international double-blind, double-dummy, placebo-controlled randomised clinical trial: study protocol.

Kotsaki A, Pickkers P, Bauer M, Calandra T, Lupse M, Wiersinga WJ, Meylan S, Bloos F, van der Poll T, Slim MA, van Mourik N, Müller MCA, van Vught L, Vlaar APJ, de Nooijer A, Bakkerus L, Weis S, Antonakos N, Netea MG, Giamarellos-Bourboulis EJ

BMJ Open. 2022 Dec 20;12(12):e067251

CD4:CD8 Ratio and CD8 Cell Count and Their Prognostic Relevance for Coronary Heart Disease Events and Stroke in Antiretroviral Treated Individuals: The Swiss HIV Cohort Study.

Chammartin F, Darling K, Abela IA, Battegay M, Furrer H, Calmy A, Bernasconi E, Schmid P, Hoffmann M, Bucher HC, and the Swiss HIV Cohort Study.

J Acquir Immune Defic Syndr. 2022 Dec 15;91(5):508-515

[Multidisciplinary approach to fracture-related infection].

Muller Q, Gerber F, Papadimitriou Olivgeris M, Di Summa P, Boillat Blanco N, Steinmetz S

Rev Med Suisse. 2022 Dec 14;18(808):2363-2370

The LAUsanne STAPHylococcus aureus ENdocarditis (LAUSTAPHEN) score: A prediction score to estimate initial risk for infective endocarditis in patients with S. aureus bacteremia.

Papadimitriou-Olivgeris M, Monney P, Mueller L, Senn L, Guery B

Front Cardiovasc Med. 2022;9:961579

Butyrate Supplementation Exacerbates Myocardial and Immune Cell Mitochondrial Dysfunction in a Rat Model of Faecal Peritonitis.

Peters VBM, Arulkumaran N, Melis MJ, Gaupp C, Roger T, Shankar-Hari M, Singer M

Life (Basel). 2022 Dec 6;12(12)

Excess BAFF Alters NR4As Expression Levels and Breg Function of Human Precursor-like Marginal Zone B-Cells in the Context of HIV-1 Infection.

Doyon-Laliberté K, Aranguren M, Byrns M, Chagnon-Choquet J, Paniconi M, Routy JP, Tremblay C, Quintal MC, Brassard N, Kaufmann DE, Poudrier J, Roger M

Int J Mol Sci. 2022 Dec 1;23(23)

Pulmonary aspergillosis: diagnosis and treatment.

Lamoth F, Calandra T

Eur Respir Rev. 2022 Dec 31;31(166)

Risk Factors and Incidence of Sexually Transmitted Infections in the Swiss HIV Cohort Study.

Bosetti D, Mugglin C, Calmy A, Cavassini M, Stöckle M, Braun D, Notter J, Haerry D, Hampel B, Kovari H, Bernasconi E, Wandeler G, Rauch A, Swiss HIV Cohort Study

Open Forum Infect Dis. 2022 Dec;9(12):ofac592

[Clinical presentation and short-term treatment of pulmonary actinomycosis].

Abdulkarim A, Pouxe M, De Vallière S, Beigelman C, Favrat B, Kokkinakis I

Rev Med Suisse. 2022 Nov 16;18(804):2177-2180

[Phage therapy for respiratory infections].

Mitropoulou G, Gijs PJ, Koutsokera A, Sauty A, Blanchon S, Csajka C, Brunet JF, Resch G, Guery B, Von Garnier C

Rev Med Suisse. 2022 Nov 16;18(804):2150-2156

Correction: The dynamic changes and sex differences of 147 immune-related proteins during acute COVID-19 in 580 individuals.

Butler-Laporte G, Gonzalez-Kozlova E, Su CY, Zhou S, Nakanishi T, Brunet-Ratnasingham E, Morrison D, Laurent L, Aflalo J, Aflalo M, Henry D, Chen Y, Carrasco-Zanini J, Farjoun Y, Pietzner M, Kimchi N, Afrasiabi Z, Rezk N, Bouab M, Petitjean L, Guzman C, X

Clin Proteomics. 2022 Nov 15;19(1):40

Therapeutic efficacy of (166)Holmium siloxane in microbrachytherapy of induced glioblastoma in minipig tumor model.

Khoshnevis M, Brown R, Belluco S, Zahi I, Maciocco L, Bonnefont-Rebeix C, Pillet-Michelland E, Tranel J, Roger T, Nennig C, Oudoire P, Marcon L, Tillement O, Louis C, Gehan H, Bardiès M, Mariani M, Muzio V, Meunier JP, Duchemin C, Michel N, N'Tsiba E, Had

Front Oncol. 2022;12:923679

Exome-wide association study to identify rare variants influencing COVID-19 outcomes: Results from the Host Genetics Initiative.

Butler-Laporte G, Povysil G, Kosmicki JA, Cirulli ET, Drivas T, Furini S, Saad C, Schmidt A, Olszewski P, Korotko U, Quinodoz M, Çelik E, Kundu K, Walter K, Jung J, Stockwell AD, Sloofman LG, Jordan DM, Thompson RC, Del Valle D, Simons N, Cheng E, Sebra R

PLoS Genet. 2022 Nov;18(11):e1010367

[COVID-19, how to treat the disease during Fall 2022?]

Chollet V, Manuel O, De Vallière S

Rev Med Suisse. 2022 Nov 2;18(802):2077-2081

Antibody response and intra-host viral evolution after plasma therapy in COVID-19 patients pre-exposed or not to B-cell-depleting agents.

Gachoud D, Pillonel T, Tsilimidos G, Battolla D, Dumas D, Opota O, Fontana S, Vollenweider P, Manuel O, Greub G, Bertelli C, Rufer N

Br J Haematol. 2022 Nov;199(4):549-559

Case report: Disseminated Scedosporium apiospermum infection with invasive right atrial mass in a heart transplant patient.

Bourlond B, Cipriano A, Regamey J, Papadimitriou-Olivgeris M, Kamani C, Seidel D, Lamoth F, Muller O, Yerly P

Front Cardiovasc Med. 2022;9:1045353

National Early Warning Score (NEWS) Outperforms Quick Sepsis-Related Organ Failure (qSOFA) Score for Early Detection of Sepsis in the Emergency Department.

Durr D, Niemi T, Despraz J, Tusgul S, Dami F, Akrour R, Carron PN, Le Pogam MA, Calandra T, Meylan S

Antibiotics (Basel). 2022 Oct 31;11(11)

Unsupervised machine learning predicts future sexual behaviour and sexually transmitted infections among HIV-positive men who have sex with men.

Andresen S, Balakrishna S, Mugglin C, Schmidt AJ, Braun DL, Marzel A, Doco Lecompte T, Darling KE, Roth JA, Schmid P, Bernasconi E, Günthard HF, Rauch A, Kouyos RD, Salazar-Vizcaya L, Swiss HIV Cohort Study.

PLoS Comput Biol. 2022 Oct;18(10):e1010559

A boost with SARS-CoV-2 BNT162b2 mRNA vaccine elicits strong humoral responses independently of the interval between the first two doses.

Tauzin A, Gong SY, Chatterjee D, Ding S, Painter MM, Goel RR, Beaudoin-Bussières G, Marchitto L, Boutin M, Laumaea A, Okeny J, Gendron-Lepage G, Bourassa C, Medjahed H, Goyette G, Williams JC, Bo Y, Gokool L, Morrisseau C, Arlotto P, Bazin R, Fafard J, Tr

Cell Rep. 2022 Oct 25;41(4):111554

Women with Cervical High-Risk Human Papillomavirus: Be Aware of Your Anus! The ANGY Cross-Sectional Clinical Study.

Jacot-Guillarmod M, Balaya V, Mathis J, Hübner M, Grass F, Cavassini M, Sempoux C, Mathevet P, Pache B

Cancers (Basel). 2022 Oct 18;14(20)

HBV REPLICATION DURING TENOFOVIR THERAPY IS FREQUENT IN HIV/HBV-COINFECTION.

Hofmann E, Surial B, Boillat-Blanco N, Günthard HF, Stöckle M, Bernasconi E, Schmid P, Calmy A, Suter-Riniker F, Rauch A, Wandeler G, Béguelin C, SHCS.

Clin Infect Dis. 2022 Oct 15

Things We Do for No Reason™: Computed tomography of the head before lumbar puncture in low-risk adults and children.

Regina J, Manuel O

J Hosp Med. 2022 Oct 7

Phage therapy for pulmonary infections: lessons from clinical experiences and key considerations.

Mitropoulou G, Koutsokera A, Csajka C, Blanchon S, Sauty A, Brunet JF, von Garnier C, Resch G, Guery B

Eur Respir Rev. 2022 Dec 31;31(166)

Outcome of COVID-19 in Kidney Transplant Recipients Through the SARS-CoV-2 Variants Eras: Role of Anti-SARS-CoV-2 Monoclonal Antibodies.

Papadimitriou-Olivgeris M, Cipriano A, Guggisberg N, Kroemer M, Tschopp J, Manuel O, Golshayan D

Transpl Int. 2022;35:10721

Antimicrobial stewardship programs in solid-organ transplant recipients in Switzerland.

Bielicki JA, Manuel O, Swiss Transplant Cohort Study (STCS).

Transpl Infect Dis. 2022 Oct;24(5):e13902

Cross-reaction of naturally-produced β-lactamases from Citrobacter farmeri and Citrobacter amalonaticus with immunological detection of CTX-M enzymes.

Ortiz de la Rosa JM, Bouvier M, Poirel L, Greub G, Blanc D, Nordmann P

Diagn Microbiol Infect Dis. 2022 Oct;104(2):115760

Low Risk of Failing Direct-Acting Antivirals in People With Human Immunodeficiency Virus/Hepatitis C Virus From Sub-Saharan Africa or Southeastern Asia: A European Cross-Sectional Study.

Isfordink C, Boyd A, Mocroft A, Kusejko K, Smit C, de Wit S, Mahungu T, Falconer K, Wandeler G, Cavassini M, Stöckle M, Schinkel J, Rauch A, Peters L, van der Valk M, for EuroSIDA, the Swiss HIV Cohort Study, and the ATHENA Observational Cohort.

Open Forum Infect Dis. 2022 Oct;9(10):ofac508

Prevalence and Factors Associated with Prosthetic Joint Infections in Patients with Staphylococcus aureus Bacteraemia: A 7-Year Retrospective Study.

Papadimitriou-Olivgeris M, Senn L, Bertelli C, Grandbastien B, Steinmetz S, Boillat-Blanco N

Antibiotics (Basel). 2022 Sep 28;11(10)

Long-term trends of alanine aminotransferase levels among persons living with human immunodeficiency virus/hepatitis B virus with and without hepatitis delta coinfection.

Begré L, Béguelin C, Boyd A, Peters L, Rockstroh J, Günthard HF, Bernasconi E, Cavassini M, Lacombe K, Mocroft A, Wandeler G, Rauch A

Front Med (Lausanne). 2022;9:988356

Anticholinergic and Sedative Medications Are Associated With Neurocognitive Performance of Well Treated People With Human Immunodeficiency Virus.

Jakeman B, Scherrer AU, Darling KEA, Damas J, Bieler-Aeschlimann M, Hasse B, Schlosser L, Hachfeld A, Gutbrod K, Tarr PE, Calmy A, Assal F, Kunze U, Stoeckle M, Schmid P, Toller G, Rossi S, di Benedetto C, du Pasquier R, Cavassini M, Marzolini C, NAMACO S

Open Forum Infect Dis. 2022 Sep;9(9):ofac457

Ribavirin for Treatment of Subjects with Respiratory Syncytial Virus-Related Infection: A Systematic Review and Meta-Analysis.

Tejada S, Martinez-Reviejo R, Karakoc HN, Peña-López Y, Manuel O, Rello J

Adv Ther. 2022 Sep;39(9):4037-4051

Epidemiology and outcomes of bone and joint infections in solid organ transplant recipients.

Pham TT, Andrey DO, Stampf S, Burkhard SH, Hirzel C, Tschopp J, Ullrich K, Strahm C, Schreiber PW, Boillat-Blanco N, Garzoni C, Khanna N, Manuel O, Mueller NJ, Suva D, van Delden C, Uçkay I, Neofytos D, Swiss Transplant Cohort Study.

Am J Transplant. 2022 Aug 29

Kidney Transplantation in Patients With Active SARS-CoV-2 Replication: An Initial Case Series.

Halfon M, Stavart L, Venetz JP, Manuel O, Golshayan D

Transpl Int. 2022;35:10716

Medication Adherence Evaluated Through Electronic Monitors During the 2020 COVID-19 Pandemic Lockdown in Switzerland: A Longitudinal Analysis.

Bandiera C, Pasquier J, Locatelli I, Niquille A, Wuerzner G, Dotta-Celio J, Hachfeld A, Wandeler G, Wagner AD, Csajka C, Zanchi A, Cavassini M, Schneider MP

Patient Prefer Adherence. 2022;16:2313-2320

The deficiency in Th2-like Tfh cells affects the maturation and quality of HIV-specific B cell response in viremic infection.

Noto A, Suffiotti M, Joo V, Mancarella A, Procopio FA, Cavet G, Leung Y, Corpataux JM, Cavassini M, Riva A, Stamatatos L, Gottardo R, McDermott AB, Koup RA, Fenwick C, Perreau M, Pantaleo G

Front Immunol. 2022;13:960120

Molecular typing of Clostridioides difficile from frozen stool samples to investigate cross-transmissions: A proof of concept.

Blanc DS, Poncet F, Grandbastien B, Prod'hom G, Greub G, Senn L

Indian J Med Microbiol. 2022 Aug 22

Female Genital Mutilation/Cutting in the Swiss HIV Cohort Study: A Cross-Sectional Study.

Mauri F, Cottler-Casanova S, Cavassini M, Stoeckle M, Wandeler G, Schmid P, Braun DL, Scherrer A, Bernasconi E, Calmy A, Abdulcadir J

J Immigr Minor Health. 2022 Aug 9

Modes of action and diagnostic value of miRNAs in sepsis.

Antonakos N, Gilbert C, Théroude C, Schrijver IT, Roger T

Front Immunol. 2022;13:951798

Solid organ transplantation from donors with recent or current SARS-CoV-2 infection: A systematic review.

Martinez-Reviejo R, Tejada S, Cipriano A, Karakoc HN, Manuel O, Rello J

Anaesth Crit Care Pain Med. 2022 Aug;41(4):101098

Κey Role of Early Source Control in Candidemic Patients With Sepsis or Septic Shock.

Papadimitriou-Olivgeris M, Battistolo J, Poissy J, Coste A, Bochud PY, Calandra T, Senn L, Lamoth F

Open Forum Infect Dis. 2022 Aug;9(8):ofac383

Empiric versus pre-emptive antifungal strategy in high-risk neutropenic patients on fluconazole prophylaxis: a randomized trial of the European organization for Research and Treatment of cancer (EORTC 65091).

Maertens J, Lodewyck T, Peter Donnelly J, Chantepie S, Robin C, Blijlevens N, Turlure P, Selleslag D, Baron F, Aoun M, Heinz WJ, Bertz H, Ráčil Z, Vandercam B, Drgona L, Coiteux V, Llorente CC, Schaefer-Prokop C, Paesmans M, Ameye L, Meert L, Cheung KJ, H

Clin Infect Dis. 2022 Jul 30

Real-Life Therapeutic Concentration Monitoring of Long-Acting Cabotegravir and Rilpivirine: Preliminary Results of an Ongoing Prospective Observational Study in Switzerland.

Thoueille P, Alves Saldanha S, Schaller F, Munting A, Cavassini M, Braun D, Günthard HF, Kusejko K, Surial B, Furrer H, Rauch A, Ustero P, Calmy A, Stoeckle M, Battegay M, Marzolini C, Andre P, Guidi M, Buclin T, Decosterd LA, On Behalf Of The Swiss Hiv C

Pharmaceutics. 2022 Jul 29;14(8)

Risk factors for Nontuberculous Mycobacteria Infections in Solid Organ Transplant recipients: a multinational case-control study.

Mejia-Chew C, Carver PL, Rutjanawech S, Camargo LFA, Fernandes R, Belga S, Daniels SA, Mueller NJ, Burkhard S, Theodoropoulos NM, Postma DF, van Duijn PJ, Fariñas MC, González-Rico C, Hand J, Lowe A, Bodro M, Vanino E, Cruz AF, Ramos A, Makek MJ, Mjahed R

Clin Infect Dis. 2022 Jul 26

Surgical site infections after simultaneous pancreas kidney and pancreas transplantation in the Swiss Transplant Cohort Study.

Schreiber PW, Laager M, Boggian K, Neofytos D, van Delden C, Egli A, Dickenmann M, Hirzel C, Manuel O, Koller M, Rossi S, Schmied B, Gürke L, Matter M, Berney T, de Rougemont O, Kuster SP, Stampf S, Mueller NJ, Swiss Transplant Cohort Study (STCS).

J Hosp Infect. 2022 Jul 12

Author Correction: Increased prevalence of clonal hematopoiesis of indeterminate potential amongst people living with HIV.

Bick AG, Popadin K, Thorball CW, Uddin MM, Zanni MV, Yu B, Cavassini M, Rauch A, Tarr P, Schmid P, Bernasconi E, Günthard HF, Libby P, Boerwinkle E, McLaren PJ, Ballantyne CM, Grinspoon S, Natarajan P, Fellay J, Swiss HIV Cohort Study.

Sci Rep. 2022 Jul 8;12(1):11638

Point-of-care ultrasound for tuberculosis management in Sub-Saharan Africa-a balanced SWOT analysis.

Suttels V, Du Toit JD, Fiogbé AA, Wachinou AP, Guendehou B, Alovokpinhou F, Toukoui P, Hada AR, Sefou F, Vinasse P, Makpemikpa G, Capo-Chichi D, Garcia E, Brahier T, Keitel K, Ouattara K, Cissoko Y, Beye SA, Mans PA, Agodokpessi G, Boillat-Blanco N, Hartl

Int J Infect Dis. 2022 Jul 8;123:46-51

Active PD-L1 incorporation within HIV virions functionally impairs T follicular helper cells.

Munoz O, Banga R, Schelling R, Procopio FA, Mastrangelo A, Nortier P, Ohmiti K, Daraspe J, Cavassini M, Fenwick C, Perez L, Perreau M

PLoS Pathog. 2022 Jul;18(7):e1010673

Development and Validation of a Risk Score for Post-Transplant Lymphoproliferative Disorders among Solid Organ Transplant Recipients.

Dos Santos Q, Wareham NE, Mocroft A, Rasmussen A, Gustafsson F, Perch M, Sørensen SS, Manuel O, Müller NJ, Lundgren J, Reekie J

Cancers (Basel). 2022 Jul 4;14(13)

Fecal microbiota transplantation: a review on current formulations in Clostridioides difficile infection and future outlooks.

Rakotonirina A, Galperine T, Allémann E

Expert Opin Biol Ther. 2022 Jul;22(7):929-944

Implementing a surgical site infection prevention bundle for emergency appendectomy: Worth the effort or waste of time?

Jurt J, Floquet L, Hübner M, Moulin E, Senn L, Demartines N, Grass F

Surgery. 2022 Jul;172(1):11-15

Central nervous system infections in solid organ transplant recipients: Results from the Swiss Transplant Cohort Study.

van den Bogaart L, Lang BM, Rossi S, Neofytos D, Walti LN, Khanna N, Mueller NJ, Boggian K, Garzoni C, Mombelli M, Manuel O, Swiss Transplant Cohort Study.

J Infect. 2022 Jul;85(1):1-7

Treatment and Outcomes of Clostridioides difficile Infection in Switzerland: A Two-Center Retrospective Cohort Study.

Filippidis P, Kampouri E, Woelfle M, Badinski T, Croxatto A, Galperine T, Papadimitriou-Olivgeris M, Grandbastien B, Achermann Y, Guery B

J Clin Med. 2022 Jun 30;11(13)

Utility of Polymerase Chain Reaction in Nasopharyngeal Swabs for Identifying Respiratory Bacteria Causing Community-Acquired Pneumonia.

Demars Y, Brahier T, Rotzinger DC, Brouillet R, Jaton K, Opota O, Boillat-Blanco N

Microbiol Spectr. 2022 Jun 29;10(3):e0037922

Changes in mental and sexual health among MSM using HIV pre-exposure prophylaxis during the SARS-CoV-2 pandemic: longitudinal analysis of the SwissPrEPared cohort study.

Winter BL, Hovaguimian F, Kouyos RD, Schmidt AJ, Bernasconi E, Braun DL, Calmy A, Notter J, Stoeckle M, Surial B, Christinet V, Cavassini M, Depmeier C, Läuchli S, Boffi El Amari E, Reinacher M, Rasi M, Bruggmann P, Haerry D, Bize R, Low N, Lehner A, Qued

Swiss Med Wkly. 2022 Jun 20;152:w30192

Point-of-care lung ultrasonography for early identification of mild COVID-19: a prospective cohort of outpatients in a Swiss screening center.

Schaad S, Brahier T, Hartley MA, Cordonnier JB, Bosso L, Espejo T, Pantet O, Hugli O, Carron PN, Meuwly JY, Boillat-Blanco N

BMJ Open. 2022 Jun 24;12(6):e060181

Effect of intravenous clarithromycin in patients with sepsis, respiratory and multiple organ dysfunction syndrome: a randomized clinical trial.

Karakike E, Scicluna BP, Roumpoutsou M, Mitrou I, Karampela N, Karageorgos A, Psaroulis K, Massa E, Pitsoulis A, Chaloulis P, Pappa E, Schrijver IT, Frantzeskaki F, Lada M, Dauby N, De Bels D, Floros I, Anisoglou S, Antoniadou E, Patrani M, Vlachogianni G

Crit Care. 2022 Jun 18;26(1):183

COVID-19 rapidly increases MDSCs and prolongs innate immune dysfunctions.

Schrijver IT, Théroude C, Antonakos N, Regina J, Le Roy D, Bart PA, Chiche JD, Perreau M, Pantaleo G, Calandra T, Roger T

Eur J Immunol. 2022 Jun 10

Aspergillus tubingensis Endocarditis: A Case Report and Review of the Literature.

Born T, Aruanno M, Kampouri E, Mombelli M, Monney P, Tozzi P, Lamoth F

Mycopathologia. 2022 Jun;187(2-3):249-258

Recommendations for the management of COVID-19 in patients with haematological malignancies or haematopoietic cell transplantation, from the 2021 European Conference on Infections in Leukaemia (ECIL 9).

Cesaro S, Ljungman P, Mikulska M, Hirsch HH, von Lilienfeld-Toal M, Cordonnier C, Meylan S, Mehra V, Styczynski J, Marchesi F, Besson C, Baldanti F, Masculano RC, Beutel G, Einsele H, Azoulay E, Maertens J, de la Camara R, ECIL 9., Pagano L

Leukemia. 2022 Jun;36(6):1467-1480

Associations of modern initial antiretroviral drug regimens with all-cause mortality in adults with HIV in Europe and North America: a cohort study.

Trickey A, Zhang L, Gill MJ, Bonnet F, Burkholder G, Castagna A, Cavassini M, Cichon P, Crane H, Domingo P, Grabar S, Guest J, Obel N, Psichogiou M, Rava M, Reiss P, Rentsch CT, Riera M, Schuettfort G, Silverberg MJ, Smith C, Stecher M, Sterling TR, Ingle

Lancet HIV. 2022 Jun;9(6):e404-e413

Intradermal Testing With COVID-19 mRNA Vaccines Predicts Tolerance.

Stehlin F, Mahdi-Aljedani R, Canton L, Monzambani-Banderet V, Miauton A, Girard C, Kammermann K, Meylan S, Ribi C, Harr T, Yerly D, Muller YD

Front Allergy. 2022;3:818049

Immunocompromised patients have been neglected in COVID-19 trials: a call for action.

Trøseid M, Hentzien M, Ader F, Cardoso SW, Arribas JR, Molina JM, Mueller N, Hites M, Bonnet F, Manuel O, Costagliola D, Grinsztejn B, Olsen IC, Yazdapanah Y, Calmy A, EU RESPONSE., COMBINE.

Clin Microbiol Infect. 2022 May 25

Anti-SARS-CoV-2 Titers Predict the Severity of COVID-19.

Kritikos A, Gabellon S, Pagani JL, Monti M, Bochud PY, Manuel O, Coste A, Greub G, Perreau M, Pantaleo G, Croxatto A, Lamoth F

Viruses. 2022 May 18;14(5)

[Biomarker-guided antibiotics prescription for lower respiratory tract infections in primary care : CRP or PCT ?]

Vingerhoets S, Mueller Y, Pedrazzini B, Boillat-Blanco N, Lhopitallier L

Rev Med Suisse. 2022 May 11;18(781):948-952

Point prevalence study of antibiotic appropriateness and possibility of early discharge from hospital among patients treated with antibiotics in a Swiss University Hospital.

Moulin E, Boillat-Blanco N, Zanetti G, Plüss-Suard C, de Vallière S, Senn L

Antimicrob Resist Infect Control. 2022 May 7;11(1):66

Four cases of audio-vestibular disorders related to immunisation with SARS-CoV-2 mRNA vaccines.

Ekobena P, Rothuizen LE, Bedussi F, Guilcher P, Meylan S, Ceschi A, Girardin F, Dao K

Int J Audiol. 2022 May 5:1-5

How Yeast Antifungal Resistance Gene Analysis Is Essential to Validate Antifungal Susceptibility Testing Systems.

Pellaton N, Sanglard D, Lamoth F, Coste AT

Front Cell Infect Microbiol. 2022;12:859439

A systematic molecular epidemiology screen reveals numerous HIV-1 superinfections in the Swiss HIV Cohort Study.

Chaudron SE, Leemann C, Kusejko K, Nguyen H, Tschumi N, Marzel A, Huber M, Böni J, Perreau M, Klimkait T, Yerly S, Ramette A, Hirsch HH, Rauch A, Calmy A, Vernazza P, Bernasconi E, Cavassini M, Metzner KJ, Kouyos RD, Günthard HF, Swiss HIV Cohort Study.

J Infect Dis. 2022 Apr 29

Nouveaux antibiotiques ? Perspectives.

Guery B

Rev Med Suisse. 2022 Apr 27;18(779):837-838

Correction to: Identifying and Characterizing Trans Women in the Swiss HIV Cohort Study as an Epidemiologically Distinct Risk Group.

Nguyen H, Hampel B, Nuñez DG, Battegay M, Hachfeld A, Bernasconi E, Calmy A, Cavassini M, Vernazza P, Fellay J, Rudolph H, Huber M, Leuzinger K, Perreau M, Scherrer A, Ramette AN, Yerly S, Günthard HF, Kouyos RD, Kusejko K

Clin Infect Dis. 2022 Apr 27

Correction: Infectious complications of targeted drugs and biotherapies in acute leukemia. Clinical practice guidelines by the European Conference on Infections in Leukemia (ECIL), a joint venture of the European Group for Blood and Marrow Transplantation

Maschmeyer G, Bullinger L, Garcia-Vidal C, Herbrecht R, Maertens J, Menna P, Pagano L, Thiebaut-Bertrand A, Calandra T

Leukemia. 2022 Apr 19

Deciphering the Mrr1/Mdr1 Pathway in Azole Resistance of Candida auris.

Li J, Coste AT, Bachmann D, Sanglard D, Lamoth F

Antimicrob Agents Chemother. 2022 Apr 19;66(4):e0006722

[Methicillin-resistant Staphylococcus aureus: 15 years of molecular epidemiology in Western Switzerland].

Blanc DS, Grandbastien B, Bally F, Lienhard R, Tritten ML, Clerc O, Fracheboud D, Pfister S, Chuard C, Burr M, Schmiedel Y, Liassine N, Jost G, Togni G, Di Lorenzo V, Jayol A, Prod'hom G, Greub G, Senn L

Rev Med Suisse. 2022 Apr 13;18(777):724-728

Summary of the 2021 ICRP workshop on the future of radiological protection.

Ruehm W, Clement C, Cool D, Laurier D, Bochud FO, Applegate KE, Schneider T, Bouffler SD, Cho K, Hirth G, Kai M, Liu S, Romanov SA, Wojcik A

J Radiol Prot. 2022 Apr 13

[Pulmonary tularemia : a diagnosis not to be missed].

Uriel Valladares P, Opota O, Beigelman-Aubry C, Bochud PY, Lamoth F

Rev Med Suisse. 2022 Apr 13;18(777):707-711

[Antibiotics use for common ENT infections].

Kratz B, Boillat Blanco N, Tschopp J

Rev Med Suisse. 2022 Apr 13;18(777):694-699

Bas les masques, et après ?

Kaiser L, Vetter P, Calmy A, Manuel O, Calandra T

Rev Med Suisse. 2022 Apr 13;18(777):691-692

An Approach to Quantifying the Interaction between Behavioral and Transmission Clusters.

Salazar-Vizcaya L, Kusejko K, Günthard HF, Böni J, Metzner KJ, Braun DL, Nicca D, Bernasconi E, Calmy A, Darling KEA, Wandeler G, Kouyos RD, Rauch A, The Swiss Hiv Cohort Study

Viruses. 2022 Apr 10;14(4)

Management of Beta-Lactam Antibiotics Allergy: A Real-Life Study.

Iuliano S, Senn L, Moi L, Muller YD, Ribi C, Buss G, Comte D

Front Allergy. 2022;3:853587

Infectious complications of targeted drugs and biotherapies in acute leukemia. Clinical practice guidelines by the European Conference on Infections in Leukemia (ECIL), a joint venture of the European Group for Blood and Marrow Transplantation (EBMT), the

Maschmeyer G, Bullinger L, Garcia-Vidal C, Herbrecht R, Maertens J, Menna P, Pagano L, Thiebaut-Bertrand A, Calandra T

Leukemia. 2022 Apr 2

Methods for the dietary assessment of adult kidney stone formers: a scoping review.

Legay C, Krasniqi T, Bourdet A, Bonny O, Bochud M

J Nephrol. 2022 Apr;35(3):821-830

Infection Risk in the First Year After ABO-incompatible Kidney Transplantation: A Nationwide Prospective Cohort Study.

Hirzel C, Projer L, Atkinson A, Surial B, Mueller NJ, Manuel O, Mombelli M, van Delden C, Hirsch HH, Boggian K, Walti LN, Sidler D, Hadaya K, Dickenmann M, Müller TF, Binet I, Golshayan D, Huynh-Do U, Swiss Transplant Cohort Study (STCS).

Transplantation. 2022 Apr 1

The unresolved issues in the management of mucormycosis.

Lamoth F

Eur J Intern Med. 2022 Mar 26

Ultrasound assessment of gastric contents in children before general anaesthesia for acute appendicitis.

Evain JN, Allain T, Dilworth K, Bertrand B, Rabattu PY, Mortamet G, Desgranges FP, Bouvet L, Payen JF

Anaesthesia. 2022 Mar 23

Post‑COVID‑19 Syndrome in Outpatients: a Cohort Study.

Desgranges F, Tadini E, Munting A, Regina J, Filippidis P, Viala B, Karachalias E, Suttels V, Haefliger D, Kampouri E, Van Singer M, Tschopp J, Rochat Stettler L, Schaad S, Brahier T, Hugli O, Mueller Y, Gouveia A, Opota O, Carron PN, Guery B, Papadimitri

J Gen Intern Med. 2022 Mar 22

Similar but different: Integrated phylogenetic analysis of Austrian and Swiss HIV-1 sequences reveal differences in transmission patterns of the local HIV-1 epidemics.

Kusejko K, Tschumi N, Chaudron SE, Nguyen H, Battegay M, Bernasconi E, Böni J, Huber M, Calmy A, Cavassini M, Egle A, Grabmeier-Pfistershammer K, Haas B, Hirsch H, Klimkait T, Öllinger A, Perreau M, Ramette A, Babouee Flury B, Sarcletti M, Scherrer A, Sch

J Acquir Immune Defic Syndr. 2022 Mar 17

Impact of different urinary tract infection phenotypes within the first year post-transplant on renal allograft outcomes.

Brune JE, Dickenmann M, Wehmeier C, Sidler D, Walti L, Golshayan D, Manuel O, Hadaya K, Neofytos D, Schnyder A, Boggian K, Müller T, Schachtner T, Khanna N, Schaub S, and the Swiss Transplant Cohort Study.

Am J Transplant. 2022 Mar 14

Technical note: Validation of an ultrahigh dose rate pulsed electron beam monitoring system using a current transformer for FLASH preclinical studies.

Gonçalves Jorge P, Grilj V, Bourhis J, Vozenin MC, Germond JF, Bochud F, Bailat C, Moeckli R

Med Phys. 2022 Mar;49(3):1831-1838

Ultrasound characterization of bioinspired functionally graded soft-to-hard composites: Experiment and modeling.

Aghaei A, Bochud N, Rosi G, Grossman Q, Ruffoni D, Naili S

J Acoust Soc Am. 2022 Mar;151(3):1490

MRSA surveillance programmes worldwide: moving towards a harmonised international approach.

Baede VO, David MZ, Andrasevic AT, Blanc DS, Borg M, Brennan G, Catry B, Chabaud A, Empel J, Enger H, Hallin M, Ivanova M, Kronenberg A, Kuntaman K, Larsen AR, Latour K, Lindsay JA, Pichon B, Santosaningsih D, Schouls LM, Vandenesch F, Werner G, Żabicka D

Int J Antimicrob Agents. 2022 Mar;59(3):106538

Meta-GWAS Reveals Novel Genetic Variants Associated with Urinary Excretion of Uromodulin.

Joseph CB, Mariniello M, Yoshifuji A, Schiano G, Lake J, Marten J, Richmond A, Huffman JE, Campbell A, Harris SE, Troyanov S, Cocca M, Robino A, Thériault S, Eckardt KU, Wuttke M, Cheng Y, Corre T, Kolcic I, Black C, Bruat V, Concas MP, Sala C, Aeschbache

J Am Soc Nephrol. 2022 Mar;33(3):511-529

Entropy determination for mixtures in the adiabatic grand-isobaric ensemble.

Desgranges C, Delhommelle J

J Chem Phys. 2022 Feb 28;156(8):084113

Impact of Latent Tuberculosis Infection on the Incidence of Type 2 Diabetes Mellitus in HIV-Infected Participants in the Swiss HIV Cohort Study.

Tepekule B, Kusejko K, Zeeb M, Tarr PE, Calmy A, Battegay M, Furrer H, Cavassini M, Bernasconi E, Notter J, Günthard HF, Nemeth J, Kouyos RD, Swiss HIV Cohort Study.

J Infect Dis. 2022 Feb 16

High levels of monocytic myeloid-derived suppressor cells are associated with favorable outcome in patients with pneumonia and sepsis with multi-organ failure.

Schrijver IT, Karakike E, Théroude C, Baumgartner P, Harari A, Giamarellos-Bourboulis EJ, Calandra T, Roger T

Intensive Care Med Exp. 2022 Feb 11;10(1):5

Low neutralizing antibody titers after asymptomatic or non-severe SARS-CoV-2 infection over a 6-month assessment period.

Lazor-Blanchet C, Zygoura P, Dafni U, Lamoth F, Tsourti Z, Lobritz MA, Regina J, Grandbastien B, Fenwick C, Pantaleo G, Calandra T, Meylan SD

J Infect. 2022 Feb 5

A highly virulent variant of HIV-1 circulating in the Netherlands.

Wymant C, Bezemer D, Blanquart F, Ferretti L, Gall A, Hall M, Golubchik T, Bakker M, Ong SH, Zhao L, Bonsall D, de Cesare M, MacIntyre-Cockett G, Abeler-Dörner L, Albert J, Bannert N, Fellay J, Grabowski MK, Gunsenheimer-Bartmeyer B, Günthard HF, Kivelä P

Science. 2022 Feb 4;375(6580):540-545

Macrophage migration inhibitory factor is overproduced through EGR1 in TET2low resting monocytes.

Pronier E, Imanci A, Selimoglu-Buet D, Badaoui B, Itzykson R, Roger T, Jego C, Naimo A, Francillette M, Breckler M, Wagner-Ballon O, Figueroa ME, Aglave M, Gautheret D, Porteu F, Bernard OA, Vainchenker W, Delhommeau F, Solary E, Droin NM

Commun Biol. 2022 Feb 3;5(1):110

Anticholinergic medication use in elderly people living with HIV and self-reported neurocognitive impairment: a prospective cohort study.

Jakeman B, Scherrer A, Battegay M, Gunthard HF, Hachfeld A, Calmy A, Schmid P, Bernasconi E, Cavassini M, Marzolini C

J Antimicrob Chemother. 2022 Feb 2;77(2):492-499

Long-acting antiretrovirals: a new era for the management and prevention of HIV infection.

Thoueille P, Choong E, Cavassini M, Buclin T, Decosterd LA

J Antimicrob Chemother. 2022 Feb 2;77(2):290-302

Long-acting antiretrovirals: a new era for the management and prevention of HIV infection.

Thoueille P, Choong E, Cavassini M, Buclin T, Decosterd LA

J Antimicrob Chemother. 2022 Feb 2;77(2):290-302

Performance of the Digital Dietary Assessment Tool MyFoodRepo.

Zuppinger C, Taffé P, Burger G, Badran-Amstutz W, Niemi T, Cornuz C, Belle FN, Chatelan A, Paclet Lafaille M, Bochud M, Gonseth Nusslé S

Nutrients. 2022 Feb 1;14(3)

Reply to: 'Lack of evidence for intergenerational inheritance of immune resistance to infections'.

Nat Immunol. 2022 Feb;23(2):208-209

Frequency and causes of antifungal treatment changes in allogeneic haematopoïetic cell transplant recipients with invasive mould infections.

Roth RS, Masouridi-Levrat S, Giannotti F, Mamez AC, Glambedakis E, Lamoth F, Bochud PY, Erard V, Emonet S, Van Delden C, Kaiser L, Chalandon Y, Neofytos D

Mycoses. 2022 Feb;65(2):199-210

Increased prevalence of clonal hematopoiesis of indeterminate potential amongst people living with HIV.

Sci Rep. 2022 Jan 12;12(1):577

Next Generation Sequencing of Circulating Tumor DNA Can Optimize Second Line Treatment in RAS Wild Type Metastatic Colorectal Cancer after Progression on Anti-EGFR Therapy: Time to Rethink Our Approach.

Mauri D, Kamposioras K, Matthaios D, Tolia M, Nixon I, Dambrosio M, Zarkavelis G, Papadimitriou K, Petricevic B, Kountourakis P, Kopecky J, Grašič Kuhar C, Popovic L, Chilingirova NP, De Mello RA, Dedic N, Katsanos K, Mostert B, Alongi F, de Bari B, Corra

Oncol Res Treat. 2022 Jan 9

High false-positive rate of (1,3)-β-D-glucan in onco-hematological patients receiving immunoglobulins and therapeutic antibodies.

Tschopp J, Brunel AS, Spertini O, Croxatto A, Lamoth F, Bochud PY

Clin Infect Dis. 2022 Jan 6

Clinical sign and biomarker-based algorithm to identify bacterial pneumonia among outpatients with lower respiratory tract infection in Tanzania.

Hogendoorn SKL, Lhopitallier L, Richard-Greenblatt M, Tenisch E, Mbarack Z, Samaka J, Mlaganile T, Mamin A, Genton B, Kaiser L, D'Acremont V, Kain KC, Boillat-Blanco N

BMC Infect Dis. 2022 Jan 6;22(1):39

Investigational antifungal agents for invasive mycoses: a clinical perspective.

Lamoth F, Lewis RE, Kontoyiannis DP

Clin Infect Dis. 2022 Jan 5

Invasive aspergillosis in coronavirus disease 2019: a practical approach for clinicians.

Lamoth F

Curr Opin Infect Dis. 2022 Jan 3

How to Manage Pseudomonas aeruginosa Infections.

Papadimitriou-Olivgeris M, Jacot D, Guery B

Adv Exp Med Biol. 2022;1386:425-445

2021

Stapled Porcine Pericardium Displays Lower Infectivity In Vitro Than Native and Sutured Porcine Pericardium.

Del Tatto B, Le Roy D, Lambelet M, Corpataux JM, Chakfé N, Giulieri S, Allagnat F, Roger T, Saucy F

J Surg Res. 2021 Dec 28;272:132-138

Prevention of viral infections in solid organ transplant recipients in the era of COVID-19: a narrative review.

Filippidis P, Vionnet J, Manuel O, Mombelli M

Expert Rev Anti Infect Ther. 2021 Dec 22:1-18

Distribution of Aspergillus Species and Prevalence of Azole Resistance in Respiratory Samples From Swiss Tertiary Care Hospitals.

Ragozzino S, Goldenberger D, Wright PR, Zimmerli S, Mühlethaler K, Neofytos D, Riat A, Boggian K, Nolte O, Conen A, Fankhauser H, Schreiber PW, Zbinden R, Lamoth F, Khanna N

Open Forum Infect Dis. 2022 Feb;9(2):ofab638

Editorial: Macrophage Plasticity in Sterile and Pathogen-Induced Inflammation.

Kourtzelis I, Hewitson J, Roger T

Front Immunol. 2021;12:823023

A 31-Year-Old Patient Living With Human Immunodeficiency Virus With Thyroiditis and Multiple Intrathoracic Lesions.

Filippidis P, Barras JL, Cavassini M, Kritikos A

Clin Infect Dis. 2021 Dec 16;73(12):2361-2364

Cohort profile: The Swiss Transplant Cohort Study (STCS): A nationwide longitudinal cohort study of all solid organ recipients in Switzerland.

Stampf S, Mueller NJ, van Delden C, Pascual M, Manuel O, Banz V, Binet I, De Geest S, Bochud PY, Leichtle A, Schaub S, Steiger J, Koller M, Swiss Transplant Cohort Study., members of the Swiss Transplant Cohort Study.

BMJ Open. 2021 Dec 15;11(12):e051176

Telomere Length Declines In Persons Living With HIV Before Antiretroviral Therapy Start But Not After Viral Suppression: A Longitudinal Study Over >17 Years.

Schoepf IC, Thorball CW, Ledergerber B, Kootstra NA, Reiss P, Raffenberg M, Engel T, Braun DL, Hasse B, Thurnheer C, Marzolini C, Seneghini M, Bernasconi E, Cavassini M, Buvelot H, Arribas JR, Kouyos RD, Fellay J, Günthard HF, Tarr PE, Swiss HIV Cohort St

J Infect Dis. 2021 Dec 15

Cardiovascular risk assessment in people living with HIV compared to the general population.

Delabays B, Cavassini M, Damas J, Beuret H, Calmy A, Hasse B, Bucher HC, Frischknecht M, Müller O, Méan M, Vollenweider P, Marques-Vidal P, Vaucher J

Eur J Prev Cardiol. 2021 Dec 10

The association between hepatitis B virus infection and nonliver malignancies in persons living with HIV: results from the EuroSIDA study.

Mocroft A, Miro JM, Wandeler G, Llibre JM, Boyd A, van Bremen K, Beniowski M, Mikhalik J, Cavassini M, Maltez F, Duvivier C, Uberti Foppa C, Knysz B, Bakowska E, Kuzovatova E, Domingo P, Zagalo A, Viard JP, Degen O, Milinkovic A, Benfield T, Peters L, Eur

HIV Med. 2021 Dec 9

The EHA Research Roadmap: Infections in Hematology.

Cordonnier C, Ljungman P, Cesaro S, Hirsch HH, Maschmeyer G, von Lilienfeld-Toal M, Vehreschild M, Mikulska M, Emonts M, Gennery AR, Neofytos D, Bochud PY, Einsele H, Maertens J

Hemasphere. 2021 Dec;5(12):e662

European Society of Clinical Microbiology and Infectious Diseases: 2021 update on the treatment guidance document for Clostridioides difficile infection in adults.

van Prehn J, Reigadas E, Vogelzang EH, Bouza E, Hristea A, Guery B, Krutova M, Norén T, Allerberger F, Coia JE, Goorhuis A, van Rossen TM, Ooijevaar RE, Burns K, Scharvik Olesen BR, Tschudin-Sutter S, Wilcox MH, Vehreschild MJGT, Fitzpatrick F, Kuijper EJ

Clin Microbiol Infect. 2021 Dec;27 Suppl 2:S1-S21

Infective endocarditis, is there a goal beyond antibiotics and surgery?

Guery B, Papadimitriou-Olivgeris M

Eur J Intern Med. 2021 Dec;94:25-26

Invasive Mold Infections in Allogeneic Hematopoietic Cell Transplant Recipients in 2020: Have We Made Enough Progress?

Roth RS, Masouridi-Levrat S, Chalandon Y, Mamez AC, Giannotti F, Riat A, Fischer A, Poncet A, Glampedakis E, Van Delden C, Kaiser L, Neofytos D

Open Forum Infect Dis. 2022 Jan;9(1):ofab596

Impact of 2020 EUCAST criteria on meropenem prescription for the treatment of Pseudomonas aeruginosa infections: an observational study in a university hospital.

Munting A, Regina J, Lhopitallier L, Kritikos A, Guery B, Senn L, Viala B

Clin Microbiol Infect. 2021 Nov 23

Decreasing incidence and determinants of Bacterial Pneumonia in people with HIV: The Swiss HIV Cohort Study.

Balakrishna S, Wolfensberger A, Kachalov V, Roth JA, Kusejko K, Scherrer AU, Furrer H, Hauser C, Calmy A, Cavassini M, Schmid P, Bernasconi E, Battegay M, Günthard HF, Kouyos RD

J Infect Dis. 2021 Nov 18

Assessment of the In Vitro and In Vivo Antifungal Activity of NSC319726 against Candida auris.

Li J, Coste AT, Bachmann D, Sanglard D, Lamoth F

Microbiol Spectr. 2021 Nov 3:e0139521

Anticholinergic medication use in elderly people living with HIV and self-reported neurocognitive impairment: a prospective cohort study.

Jakeman B, Scherrer A, Battegay M, Gunthard HF, Hachfeld A, Calmy A, Schmid P, Bernasconi E, Cavassini M, Marzolini C

J Antimicrob Chemother. 2021 Nov 3

Transmission of trained immunity and heterologous resistance to infections across generations.

Nat Immunol. 2021 Nov;22(11):1382-1390

Viral infections in lung transplantation.

Munting A, Manuel O

J Thorac Dis. 2021 Nov;13(11):6673-6694

Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study.

Balakrishna S, Salazar-Vizcaya L, Schmidt AJ, Kachalov V, Kusejko K, Thurnheer MC, Roth JA, Nicca D, Cavassini M, Battegay M, Schmid P, Bernasconi E, Günthard HF, Rauch A, Kouyos RD, Swiss HIV Cohort Study (SHCS).

PLoS Comput Biol. 2021 Oct;17(10):e1009529

A trial platform to assess approved SARS-CoV-2 vaccines in immunocompromised patients: first sub-protocol for a pilot trial comparing the mRNA vaccines Comirnaty® and COVID-19 mRNA Vaccine Moderna®.

Speich B, Chammartin F, Smith D, Stoeckle MP, Amico P, Eichenberger AL, Hasse B, Schuurmans MM, Müller T, Tamm M, Dickenmann M, Abela IA, Trkola A, Hirsch HH, Manuel O, Cavassini M, Hemkens LG, Briel M, Mueller NJ, Rauch A, Günthard HF, Koller MT, Bucher

Trials. 2021 Oct 21;22(1):724

SARS-CoV-2 vaccination in solid-organ transplant recipients: What the clinician needs to know.

Giannella M, Pierrotti LC, Helanterä I, Manuel O

Transpl Int. 2021 Oct;34(10):1776-1788

Increasing morbidity and mortality of candidemia over one decade in a Swiss university hospital.

Battistolo J, Glampedakis E, Damonti L, Poissy J, Grandbastien B, Kalbermatter L, Pagani JL, Eggimann P, Bochud PY, Calandra T, Marchetti O, Lamoth F, Fungal Infection Network of Switzerland (FUNGINOS).

Mycoses. 2021 Sep 29

Real-Life Considerations on Antifungal Treatment Combinations for the Management of Invasive Mold Infections after Allogeneic Cell Transplantation.

Glampedakis E, Roth R, Masouridi-Levrat S, Chalandon Y, Mamez AC, Giannotti F, Van Delden C, Neofytos D

J Fungi (Basel). 2021 Sep 28;7(10)

Procalcitonin and lung ultrasonography point-of-care testing to determine antibiotic prescription in patients with lower respiratory tract infection in primary care: pragmatic cluster randomised trial.

Lhopitallier L, Kronenberg A, Meuwly JY, Locatelli I, Mueller Y, Senn N, D'Acremont V, Boillat-Blanco N

BMJ. 2021 Sep 21;374:n2132

HIV testing in termination of pregnancy and colposcopy services: a scoping review.

Filippidis P, Francini K, Jacot-Guillarmod M, Mathevet P, Lhopitallier L, Cavassini M, Darling KEA

Sex Transm Infect. 2021 Sep 20

Trends of the Epidemiology of Candidemia in Switzerland: A 15-Year FUNGINOS Survey.

Adam KM, Osthoff M, Lamoth F, Conen A, Erard V, Boggian K, Schreiber PW, Zimmerli S, Bochud PY, Neofytos D, Fleury M, Fankhauser H, Goldenberger D, Mühlethaler K, Riat A, Zbinden R, Kronenberg A, Quiblier C, Marchetti O, Khanna N, Fungal Infection Network

Open Forum Infect Dis. 2021 Oct;8(10):ofab471

Trained Immunity Confers Prolonged Protection From Listeriosis.

Théroude C, Reverte M, Heinonen T, Ciarlo E, Schrijver IT, Antonakos N, Maillard N, Pralong F, Le Roy D, Roger T

Front Immunol. 2021;12:723393

Hypertension : faut-il aborder les effets indésirables possibles des médicaments avec nos patients ?

Wuerzner G, Ponte B, Meylan S, Pechère-Bertschi A

Rev Med Suisse. 2021 Sep 15;17(750):1547

Epidemiology and outcomes of medically attended and microbiologically confirmed bacterial foodborne infections in solid organ transplant recipients.

van den Bogaart L, Lang BM, Neofytos D, Egli A, Walti LN, Boggian K, Garzoni C, Berger C, Pascual M, van Delden C, Mueller NJ, Manuel O, Mombelli M, Swiss Transplant Cohort Study.

Am J Transplant. 2021 Sep 12

Long-acting antiretrovirals: a new era for the management and prevention of HIV infection.

Thoueille P, Choong E, Cavassini M, Buclin T, Decosterd LA

J Antimicrob Chemother. 2021 Sep 9

Decrease of condom use in heterosexual couples and its impact on pregnancy rates: the Swiss HIV Cohort Study (SHCS).

Hachfeld A, Atkinson A, Calmy A, de Tejada BM, Hasse B, Paioni P, Kahlert CR, Boillat-Blanco N, Stoeckle M, Aebi-Popp K, Swiss HIV Cohort Study, the Swiss Mother, Child HIV Cohort Study (MoCHiV).

HIV Med. 2021 Sep 2

Seasonal trivalent inactivated influenza vaccine with topical imiquimod in immunocompromised patients: A randomized controlled trial.

Mombelli M, Hoschler K, Cavassini M, Pascual M, Manuel O

J Infect. 2021 Sep;83(3):354-360

COVID-19-associated pulmonary aspergillosis (CAPA): how big a problem is it?

Fekkar A, Neofytos D, Nguyen MH, Clancy CJ, Kontoyiannis DP, Lamoth F

Clin Microbiol Infect. 2021 Sep;27(9):1376-1378

High-dimensional immune phenotyping of blood cells by mass cytometry in patients infected with hepatitis C virus.

Herderschee J, Heinonen T, Fenwick C, Schrijver IT, Ohmiti K, Moradpour D, Cavassini M, Pantaleo G, Roger T, Calandra T, Swiss HIV Cohort Study.

Clin Microbiol Infect. 2021 Aug 30

Initial antimicrobial management of sepsis.

Niederman MS, Baron RM, Bouadma L, Calandra T, Daneman N, DeWaele J, Kollef MH, Lipman J, Nair GB

Crit Care. 2021 Aug 26;25(1):307

Neurocognitive course at two-year follow-up in the neurocognitive assessment in the metabolic and aging cohort (NAMACO) study.

Damas J, Ledergerber B, Nadin I, Tarr PE, Stoeckle M, Kunze U, Hauser C, Gutbrod K, Calmy A, Assal F, Schmid P, Hundsberger T, di Benedetto C, Rossi S, Hasse B, Schlosser L, Pasquier RD, Darling KEA, Cavassini M

AIDS. 2021 Aug 19

Brief Report: Representations and Willingness of People Living With HIV in Switzerland to Participate in HIV Cure Trials: The Case of Gene-Modified Cell Therapies.

Gilles I, Lesage S, Barbieux C, Alessandrini M, Jackson-Perry D, Vittoz L, Peytremann-Bridevaux I, Calmy A

J Acquir Immune Defic Syndr. 2021 Aug 15;87(5):1154-1160

Precautions after vaccinating immunosuppressed patients with mRNA-based vaccines against SARS-CoV-2: does one size fit all?

Tau N, Manuel O, Rozen-Zvi B, Shargian L, Yahav D

Clin Microbiol Infect. 2021 Aug 12

The cytokines HGF and CXCL13 predict the severity and the mortality in COVID-19 patients.

Perreau M, Suffiotti M, Marques-Vidal P, Wiedemann A, Levy Y, Laouénan C, Ghosn J, Fenwick C, Comte D, Roger T, Regina J, Vollenweider P, Waeber G, Oddo M, Calandra T, Pantaleo G

Nat Commun. 2021 Aug 9;12(1):4888

Taskforce report on the diagnosis and clinical management of COVID-19 associated pulmonary aspergillosis.

Verweij PE, Brüggemann RJM, Azoulay E, Bassetti M, Blot S, Buil JB, Calandra T, Chiller T, Clancy CJ, Cornely OA, Depuydt P, Koehler P, Lagrou K, de Lange D, Lass-Flörl C, Lewis RE, Lortholary O, Liu PL, Maertens J, Nguyen MH, Patterson TF, Rijnders BJA,

Intensive Care Med. 2021 Aug;47(8):819-834

French multicentre observational study on SARS-CoV-2 infections intensive care initial management: the FRENCH CORONA study.

Roger C, Collange O, Mezzarobba M, Abou-Arab O, Teule L, Garnier M, Hoffmann C, Muller L, Lefrant JY, Guinot PG, Novy E, Abraham P, Clavier T, Bourenne J, Besch G, Favier L, Fiani M, Ouattara A, Joannes-Boyau O, Fischer MO, Leone M, Ait Tamlihat Y, Pottec

Anaesth Crit Care Pain Med. 2021 Aug;40(4):100931

COVID-19 vaccination in solid-organ transplant recipients: generating new data as fast as possible, but taking clinical decisions as slow as necessary.

Manuel O

Clin Microbiol Infect. 2021 Aug;27(8):1070-1071

Pancreatic stone protein for early mortality prediction in COVID-19 patients.

Van Singer M, Brahier T, Brochu Vez MJ, Gerhard Donnet H, Hugli O, Boillat-Blanco N

Crit Care. 2021 Jul 29;25(1):267

Postmortem Cardiopulmonary Pathology in Patients with COVID-19 Infection: Single-Center Report of 12 Autopsies from Lausanne, Switzerland.

Berezowska S, Lefort K, Ioannidou K, Ndiaye DR, Maison D, Petrovas C, Rotman S, Piazzon N, Milowich D, Sala N, Tsai CY, Multone E, Bochud PY, Oddo M, Bisig B, de Leval L

Diagnostics (Basel). 2021 Jul 28;11(8)

SARS-CoV-2 seroprevalence in healthcare workers of a Swiss tertiary care centre at the end of the first wave: a cross-sectional study.

Meylan S, Dafni U, Lamoth F, Tsourti Z, Lobritz MA, Regina J, Bressin P, Senn L, Grandbastien B, Andre C, Fenwick C, D'Acremont V, Croxatto A, Guilleret I, Greub G, Manuel O, Calandra T, Pantaleo G, Lazor-Blanchet C, COVID-19 MISS group.

BMJ Open. 2021 Jul 5;11(7):e049232

Discussing Challenges in Diagnosis of Tuberculous Meningitis and Neurosarcoidosis.

Santos A, Desgranges F, Jovanovic M, Anichini A, Kritikos A, Dunet V, Brouland JP, Théaudin M, Pot C, Du Pasquier R, Pantazou V

Can J Neurol Sci. 2021 Jun 21:1-7

Coronary Artery Disease-associated and Longevity-associated Polygenic Risk Scores for Prediction of Coronary Artery Disease Events in Persons Living with HIV: The Swiss HIV Cohort Study.

Schoepf IC, Thorball CW, Ledergerber B, Engel T, Raffenberg M, Kootstra NA, Reiss P, Hasse B, Marzolini C, Thurnheer C, Seneghini M, Bernasconi E, Cavassini M, Buvelot H, Kouyos R, Günthard HF, Fellay J, Tarr PE, , for the Swiss HIV Cohort Study.

Clin Infect Dis. 2021 Jun 6

Systematic screening of viral and human genetic variation identifies antiretroviral resistance and immune escape link.

Nguyen H, Thorball CW, Fellay J, Böni J, Yerly S, Perreau M, Hirsch HH, Kusejko K, Thurnheer MC, Battegay M, Cavassini M, Kahlert CR, Bernasconi E, Günthard HF, Kouyos RD, Swiss HIV Cohort Study.

Elife. 2021 Jun 1;10

Update on cytomegalovirus in transplant recipients: new agents, prophylaxis, and cell-mediated immunity.

Manuel O, Avery RK

Curr Opin Infect Dis. 2021 Jun 1

A prospective, observational study of fidaxomicin use for Clostridioides difficile infection in France.

Guery B, Berger P, Gauzit R, Gourdon M, Barbut F, DAFNE study group., Dafne Study Group, Bémer P, Bessède E, Camou F, Cattoir V, Couzigou C, Descamps D, Dinh A, Laurans C, Lavigne JP, Lechiche C, Leflon-Guibout V, Le Monnier A, Levast M, Mootien JY, N'Guy

J Int Med Res. 2021 Jun;49(6):3000605211021278

Transcriptomic Signature Differences Between SARS-CoV-2 and Influenza Virus Infected Patients.

Bibert S, Guex N, Lourenco J, Brahier T, Papadimitriou-Olivgeris M, Damonti L, Manuel O, Liechti R, Götz L, Tschopp J, Quinodoz M, Vollenweider P, Pagani JL, Oddo M, Hügli O, Lamoth F, Erard V, Voide C, Delorenzi M, Rufer N, Candotti F, Rivolta C, Boillat

Front Immunol. 2021;12:666163

The Long Pentraxin PTX3 Controls Klebsiella Pneumoniae Severe Infection.

Asgari F, Supino D, Parente R, Polentarutti N, Stravalaci M, Porte R, Pasqualini F, Barbagallo M, Perucchini C, Recordati C, Magrini E, Mariancini A, Riva F, Giordano A, Davoudian S, Roger T, Veer CV, Jaillon S, Mantovani A, Doni A, Garlanda C

Front Immunol. 2021;12:666198

Case Report: SARS-CoV-2 as an unexpected causal agent of predominant febrile hepatitis.

Filippidis P, van Ouwenaller F, Cerutti A, Geiger-Jacquod A, Sempoux C, Pantaleo G, Moradpour D, Lamoth F

F1000Res. 2021;10:400

Macrophage migration inhibitory factor promotes the migration of dendritic cells through CD74 and the activation of the Src/PI3K/myosin II pathway.

Ives A, Le Roy D, Théroude C, Bernhagen J, Roger T, Calandra T

FASEB J. 2021 May;35(5):e21418

Infectious complications and graft outcome following treatment of acute antibody-mediated rejection after kidney transplantation: A nationwide cohort study.

Perrottet N, Fernández-Ruiz M, Binet I, Dickenmann M, Dahdal S, Hadaya K, Müller T, Schaub S, Koller M, Rotman S, Moll S, Hopfer H, Venetz JP, Aubert V, Bühler L, Steiger J, Manuel O, Pascual M, Golshayan D, and the Swiss Transplant Cohort Study (STCS).

PLoS One. 2021;16(4):e0250829

Case Report: Stepwise Anti-Inflammatory and Anti-SARS-CoV-2 Effects Following Convalescent Plasma Therapy With Full Clinical Recovery.

Zimmerli A, Monti M, Fenwick C, Eckerle I, Beigelman-Aubry C, Pellaton C, Jaton K, Dumas D, Stamm GM, Infanti L, Andreu-Ullrich H, Germann D, Mean M, Vollenweider P, Stadelmann R, Prella M, Comte D, Guery B, Gachoud D, Rufer N

Front Immunol. 2021;12:613502

Author Correction: The influence of human genetic variation on Epstein-Barr virus sequence diversity.

Rüeger S, Hammer C, Loetscher A, McLaren PJ, Lawless D, Naret O, Khanna N, Bernasconi E, Cavassini M, Günthard HF, Kahlert CR, Rauch A, Depledge DP, Morfopoulou S, Breuer J, Zdobnov E, Fellay J, Swiss HIV Cohort Study.

Sci Rep. 2021 Apr 20;11(1):8946

[Fecal microbiota transplantation: from the evidence to the realty of the field].

Ballif A, Gerber S, Carrez L, Audry M, Sadeghipour F, Mitouassiwou A, Croxatto A, Opota O, Prod'hom G, Henchoz S, Schoepfer A, Cavassini M, Galpérine T

Rev Med Suisse. 2021 Apr 14;17(734):726-731

Invasive Hormographiella aspergillata infection in patients with acute myeloid leukemia: Report of two cases successfully treated and review of the literature.

Tschopp J, Perentes JY, Beigelman-Aubry C, Berezowska S, Lovis A, Spertini O, Bochud PY, Lamoth F

Med Mycol Case Rep. 2021 Jun;32:68-72

50 ans seulement… ou 50 ans déjà. De l’équité des genres en maladies infectieuses ?

Boillat-Blanco N, Huttner B

Rev Med Suisse. 2021 Apr 14;17(734):719-720

The future of SARS-CoV-2 vaccines in transplant recipients: To be determined.

Blumberg EA, Manuel O, Sester M, Ison MG

Am J Transplant. 2021 Apr 8

Limited Index of Clinical Suspicion and Underdiagnosis of Histopathologically Documented Invasive Mold Infections.

Caudron de Coquereaumont G, Couchepin J, Perentes JY, Krueger T, Lovis A, Rotman S, Lamoth F

Open Forum Infect Dis. 2021 Jul;8(7):ofab174

Navigating the uncertainties of COVID-19 associated aspergillosis (CAPA): A comparison with influenza associated aspergillosis (IAPA).

Lamoth F, Lewis RE, Walsh TJ, Kontoyiannis DP

J Infect Dis. 2021 Mar 26

Pharmacokinetic parameters and weight change in HIV patients newly switched to dolutegravir-based regimens in SIMPL'HIV clinical trial.

Courlet P, Barbieux C, Sculier D, Wandeler G, Stoeckle M, Bernasconi E, Braun D, Vernazza P, Cavassini M, Marinosci A, Smit M, Günthard HF, Schmid P, Limacher A, Guidi M, Alves Saldanha S, Decosterd LA, Calmy A

Br J Clin Pharmacol. 2021 Mar 25

Stage III hypertension in patients after mRNA-based SARS-CoV-2 vaccination.

Meylan S, Livio F, Foerster M, Genoud PJ, Marguet F, Wuerzner G

Hypertension. 2021 Mar 25

Invasive aspergillosis in solid organ transplant patients: diagnosis, prophylaxis, treatment, and assessment of response.

Neofytos D, Garcia-Vidal C, Lamoth F, Lichtenstern C, Perrella A, Vehreschild JJ

BMC Infect Dis. 2021 Mar 24;21(1):296

Recent progress and remaining hurdles toward clinical xenotransplantation.

Meier RPH, Longchamp A, Mohiuddin M, Manuel O, Vrakas G, Maluf DG, Buhler LH, Muller YD, Pascual M

Xenotransplantation. 2021 Mar 23:e12681

Impact of the timeliness of antibiotic therapy on the outcome of patients with sepsis and septic shock.

Asner SA, Desgranges F, Schrijver IT, Calandra T

J Infect. 2021 Mar 17

Weight and Metabolic Changes After Switching From Tenofovir Disoproxil Fumarate to Tenofovir Alafenamide in People Living With HIV : A Cohort Study.

Surial B, Mugglin C, Calmy A, Cavassini M, Günthard HF, Stöckle M, Bernasconi E, Schmid P, Tarr PE, Furrer H, Ledergerber B, Wandeler G, Rauch A

Ann Intern Med. 2021 Mar 16

Guidance on Imaging for Invasive Pulmonary Aspergillosis and Mucormycosis: From the Imaging Working Group for the Revision and Update of the Consensus Definitions of Fungal Disease from the EORTC/MSGERC.

Alexander BD, Lamoth F, Heussel CP, Prokop CS, Desai SR, Morrissey CO, Baddley JW

Clin Infect Dis. 2021 Mar 12;72(Supplement_2):S79-S88

EORTC/MSGERC Definitions of Invasive Fungal Diseases: Summary of Activities of the Intensive Care Unit Working Group.

Bassetti M, Azoulay E, Kullberg BJ, Ruhnke M, Shoham S, Vazquez J, Giacobbe DR, Calandra T

Clin Infect Dis. 2021 Mar 12;72(Supplement_2):S121-S127

Temporal trends, risk factors and outcomes of infections due to extended-spectrum β-lactamase producing Enterobacterales in Swiss solid organ transplant recipients between 2012 and 2018.

Kohler P, Wolfensberger A, Stampf S, Brönnimann A, Boggian K, van Delden C, Favre M, Hirzel C, Khanna N, Kuster SP, Manuel O, Neofytos D, Ragozzino S, Schreiber PW, Walti L, Mueller NJ, Swiss Transplant Cohort Study.

Antimicrob Resist Infect Control. 2021 Mar 7;10(1):50

Alcohol consumption and neurocognitive deficits in people with well-treated HIV in Switzerland.

Darling KEA, Locatelli I, Benghalem N, Nadin I, Calmy A, Gutbrod K, Hauser C, Brugger P, Hasse B, Kovari H, Kunze U, Stoeckle M, Fux C, Rossi S, Di Benedetto C, Früh S, Schmid P, Tarr PE, Daeppen JB, Du Pasquier R, Cavassini M, NAMACO Study Group, Swiss H

PLoS One. 2021;16(3):e0246579

Impact of COVID-19 in solid organ transplant recipients.

Danziger-Isakov L, Blumberg EA, Manuel O, Sester M

Am J Transplant. 2021 Mar;21(3):925-937

Infective endocarditis: prevention and antibiotic prophylaxis.

Sendi P, Hasse B, Frank M, Flückiger U, Boggian K, Guery B, Jeger R, Zbinden S, Agyeman P, Knirsch W, Greutmann M

Swiss Med Wkly. 2021 Feb 15;151:w20473

The association between depressive symptoms and neurocognitive impairment in people with well-treated HIV in Switzerland.

Santos G, Locatelli I, Métral M, Berney A, Nadin I, Calmy A, Tarr P, Gutbrod K, Hauser C, Brugger P, Kovari H, Kunze U, Stoeckle M, Früh S, Schmid P, Rossi S, Di Benedetto C, Du Pasquier R, Darling K, Cavassini M, NAMACO study group† and Swiss HIV Cohort

Int J STD AIDS. 2021 Feb 25:956462420987434

Data linkage to evaluate the long-term risk of HIV infection in individuals seeking post-exposure prophylaxis.

Hovaguimian F, Günthard HF, Hauser C, Conen A, Bernasconi E, Calmy A, Cavassini M, Seneghini M, Marzel A, Heinrich H, Scherrer A, Riou J, Spoerri A, Schmidlin K, Balakrishna S, Braun DL, Rampini SK, Fehr JS, Kouyos RD, Swiss HIV Cohort Study.

Nat Commun. 2021 Feb 22;12(1):1219

Novel ERG11 and TAC1b mutations associated with azole resistance in Candida auris.

Li J, Coste AT, Liechti M, Bachmann D, Sanglard D, Lamoth F

Antimicrob Agents Chemother. 2021 Feb 22

[Diagnostics and seroprevalence of SARS-CoV-2 in children : season 2].

Asner SA, Posfay-Barbe KM

Rev Med Suisse. 2021 Feb 17;17(726):340-343

Letter on "(1,3)-β-D-Glucan-based empirical antifungal interruption in suspected invasive candidiasis: a randomized trial".

Kritikos A, Lamoth F

Crit Care. 2021 Feb 9;25(1):55

Insights in the molecular mechanisms of an azole stress adapted laboratory-generated Aspergillus fumigatus strain.

Aruanno M, Gozel S, Mouyna I, Parker JE, Bachmann D, Flamant P, Coste AT, Sanglard D, Lamoth F

Med Mycol. 2021 Feb 7

The relationship of smoking and unhealthy alcohol use to the HIV care continuum among people with HIV in an integrated health care system.

Satre DD, Levine-Hall T, Sterling SA, Young-Wolff KC, Lam JO, Alexeeff S, Hojilla JC, Williams A, Justice AC, Sterne J, Cavassini M, Bryant KJ, Williams EC, Horberg MA, Volberding P, Weisner C, Silverberg MJ

Drug Alcohol Depend. 2021 Feb 1;219:108481

Establishment of a French surveillance system of Clostridiodes difficile infection: Comparison of patient's characteristics with other national and European data.

Khanafer N, Hemmendinger A, Guery B, Vachée A, Rogues AM, Gravet A, Boutoille D, Vanjak D, Barbut F, Vanhems P

Anaerobe. 2021 Feb 1;69:102329

Invasive Pulmonary Aspergillosis Goes Viral Again?

Wauters J, Lamoth F, Rijnders BJA, Calandra T

Am J Respir Crit Care Med. 2021 Feb 1;203(3):275-277

Association of Incomplete Adherence to Antiretroviral Therapy With Cardiovascular Events and Mortality in Virologically Suppressed Persons With HIV: The Swiss HIV Cohort Study.

Castillo-Mancilla JR, Cavassini M, Schneider MP, Furrer H, Calmy A, Battegay M, Scanferla G, Bernasconi E, Günthard HF, Glass TR, Swiss HIV Cohort Study .

Open Forum Infect Dis. 2021 Feb;8(2):ofab032

Clo

Kampouri E, Croxatto A, Prod'hom G, Guery B

J Clin Med. 2021 Jan 20;10(3)

Population pharmacokinetic modelling to quantify the magnitude of drug-drug interactions between amlodipine and antiretroviral drugs.

Courlet P, Guidi M, Alves Saldanha S, Cavassini M, Stoeckle M, Buclin T, Marzolini C, Decosterd LA, Csajka C

Eur J Clin Pharmacol. 2021 Jan 16

Pneumocystis jirovecii pneumonia and use of mTOR inhibitors in kidney transplantation.

Coussement J, Manuel O

Clin Infect Dis. 2021 Jan 15

The Impact of Binge Drinking on Mortality and Liver Disease in the Swiss HIV Cohort Study.

Surial B, Bertholet N, Daeppen JB, Darling KEA, Calmy A, Günthard HF, Stöckle M, Bernasconi E, Schmid P, Rauch A, Furrer H, Wandeler G, The Swiss Hiv Cohort Study

J Clin Med. 2021 Jan 14;10(2)

[HIV in the time of COVID-19 : the meeting between two pandemics].

Nawej Tshikung O, Buvelot H, Calmy A, Cavassini M

Rev Med Suisse. 2021 Jan 13;17(720-1):95-101

Case Report: Case Series of Children With Multisystem Inflammatory Syndrome Following SARS-CoV-2 Infection in Switzerland.

Fouriki A, Fougère Y, De Camaret C, Blanchard Rohner G, Grazioli S, Wagner N, Relly C, Pachlopnik Schmid J, Trück J, Kottanatu L, Perez E, Perez MH, Schaffner D, Asner SA, Hofer M

Front Pediatr. 2020;8:594127

2020

Epidemiology of sexually transmitted infections among female sex workers in Switzerland: a local, exploratory, cross-sectional study.

Vu F, Cavassini M, D'Acremont V, Greub G, Jaton K, Masserey E, Pongelli S, Bouche L, Ngarambe C, Bize R, Bodenmann P

Swiss Med Wkly. 2020 Dec 14;150:w20357

Diagnosis of latent tuberculosis infection is associated with reduced HIV viral load and lower risk for opportunistic infections in people living with HIV.

Kusejko K, Günthard HF, Olson GS, Zens K, Darling K, Khanna N, Furrer H, Vetter P, Bernasconi E, Vernazza P, Hoffmann M, Kouyos RD, Nemeth J, Swiss HIV Cohort Study.

PLoS Biol. 2020 Dec;18(12):e3000963

Analysis of inappropriate prescribing in elderly patients of the Swiss HIV Cohort Study reveals gender inequity.

Livio F, Deutschmann E, Moffa G, Rrustemi F, Stader F, Elzi L, Braun DL, Calmy A, Hachfeld A, Cavassini M, Tarr PE, Wissel K, Battegay M, Marzolini C, Swiss HIV Cohort Study .

J Antimicrob Chemother. 2020 Dec 5

Association of Antiviral Prophylaxis and Rituximab Use with Post-transplant Lymphoproliferative Disorders (PTLD): A Nationwide Cohort Study.

Walti LN, Mugglin C, Sidler D, Mombelli M, Manuel O, Hirsch HH, Khanna N, Mueller N, Berger C, Boggian K, Garzoni C, Neofytos D, van Delden C, Hirzel C, Transplant Cohort Study Stcs S

Am J Transplant. 2020 Dec 2

Repurposed Antiviral Drugs for Covid-19 - Interim WHO Solidarity Trial Results.

WHO Solidarity Trial Consortium., Pan H, Peto R, Henao-Restrepo AM, Preziosi MP, Sathiyamoorthy V, Abdool Karim Q, Alejandria MM, Hernández García C, Kieny MP, Malekzadeh R, Murthy S, Reddy KS, Roses Periago M, Abi Hanna P, Ader F, Al-Bader AM, Alhasawi A

N Engl J Med. 2020 Dec 2

Host Genomics of the HIV-1 Reservoir Size and Its Decay Rate During Suppressive Antiretroviral Treatment.

Thorball CW, Borghesi A, Bachmann N, Von Siebenthal C, Vongrad V, Turk T, Neumann K, Beerenwinkel N, Bogojeska J, Roth V, Kok YL, Parbhoo S, Wieser M, Böni J, Perreau M, Klimkait T, Yerly S, Battegay M, Rauch A, Schmid P, Bernasconi E, Cavassini M, Kouyos

J Acquir Immune Defic Syndr. 2020 Dec 1;85(4):517-524

Asymptomatic bacteriuria and urinary tract infections in kidney transplant recipients.

Coussement J, Kaminski H, Scemla A, Manuel O

Curr Opin Infect Dis. 2020 Dec;33(6):419-425

Infectious complications of rheumatoid arthritis and psoriatic arthritis during targeted and biological therapies: a viewpoint in 2020.

Lortholary O, Fernandez-Ruiz M, Baddley JW, Manuel O, Mariette X, Winthrop KL

Ann Rheum Dis. 2020 Dec;79(12):1532-1543

'In the name of common sense' - Author's reply.

Meylan S, Guery B

Clin Microbiol Infect. 2020 Dec;26(12):1696

In the name of common sense: EUCAST breakpoints and potential pitfalls.

Meylan S, Guery B

Clin Microbiol Infect. 2020 Dec;26(12):1593-1594

Chlamydia pneumoniae and Mycoplasma pneumoniae in children with Cystic Fibrosis: impact on bacterial respiratory microbiota diversity.

Pittet LF, Bertelli C, Scherz V, Rochat I, Mardegan C, Brouillet R, Jaton K, Mornand A, Kaiser L, Posfay-Barbe K, Asner SA, Greub G

Pathog Dis. 2020 Nov 28

Impact of rosuvastatin on atherosclerosis in people with HIV at moderate cardiovascular risk; a randomised, controlled trial.

Trevillyan JM, Dart A, Paul E, Cavassini M, Fehr J, Staehelin C, Dewar EM, Hoy JF, Calmy A

AIDS. 2020 Nov 26

Emergence of letermovir resistance in solid organ transplant recipients with ganciclovir resistant cytomegalovirus infection: A case series and review of the literature.

Hofmann E, Sidler D, Dahdal S, Bittel P, Suter-Riniker F, Manuel O, Walti LN, Hirzel C

Transpl Infect Dis. 2020 Nov 19:e13515

Understanding rare infections post-lung transplantation.

van den Bogaart L, Cipriano A, Koutsokera A, Manuel O

Expert Rev Respir Med. 2020 Nov 18:1-14

Caspase-8-dependent gasdermin D cleavage promotes antimicrobial defense but confers susceptibility to TNF-induced lethality.

Demarco B, Grayczyk JP, Bjanes E, Le Roy D, Tonnus W, Assenmacher CA, Radaelli E, Fettrelet T, Mack V, Linkermann A, Roger T, Brodsky IE, Chen KW, Broz P

Sci Adv. 2020 Nov;6(47)

Epidemiology, risk factors and clinical course of SARS-CoV-2 infected patients in a Swiss university hospital: An observational retrospective study.

Regina J, Papadimitriou-Olivgeris M, Burger R, Le Pogam MA, Niemi T, Filippidis P, Tschopp J, Desgranges F, Viala B, Kampouri E, Rochat L, Haefliger D, Belkoniene M, Fidalgo C, Kritikos A, Jaton K, Senn L, Bart PA, Pagani JL, Manuel O, Lhopitallier L

PLoS One. 2020;15(11):e0240781

Multisystem inflammatory syndrome with refractory cardiogenic shock due to acute myocarditis and mononeuritis multiplex after SARS-CoV-2 infection in an adult.

Othenin-Girard A, Regamey J, Lamoth F, Horisberger A, Glampedakis E, Epiney JB, Kuntzer T, de Leval L, Carballares M, Hurni CA, Rusca M, Pantet O, Di Bernardo S, Oddo M, Comte D, Piquilloud L

Swiss Med Wkly. 2020 Nov 2;150:w20387

Efficacy and safety of dolutegravir plus emtricitabine versus standard ART for the maintenance of HIV-1 suppression: 48-week results of the factorial, randomized, non-inferiority SIMPL'HIV trial.

Sculier D, Wandeler G, Yerly S, Marinosci A, Stoeckle M, Bernasconi E, Braun DL, Vernazza P, Cavassini M, Buzzi M, Metzner KJ, Decosterd LA, Günthard HF, Schmid P, Limacher A, Egger M, Calmy A, and the Swiss HIV Cohort Study (SHCS).

PLoS Med. 2020 Nov;17(11):e1003421

Increased CHIP Prevalence Amongst People Living with HIV.

Bick AG, Popadin K, Thorball CW, Uddin MM, Zanni M, Yu B, Cavassini M, Rauch A, Tarr P, Schmid P, Bernasconi E, Gunthard H, Libby P, Boerwinkle E, McLaren P, Ballantyne CM, Grinspoon SK, Natarajan P, Fellay J

medRxiv. 2020 Nov 7

Predicting Venous Thromboembolic Events in Patients with Coronavirus Disease 2019 Requiring Hospitalization: an Observational Retrospective Study by the COVIDIC Initiative in a Swiss University Hospital.

Kampouri E, Filippidis P, Viala B, Méan M, Pantet O, Desgranges F, Tschopp J, Regina J, Karachalias E, Bianchi C, Zermatten MG, Jaton K, Qanadli SD, Bart PA, Pagani JL, Guery B, Alberio L, Papadimitriou-Olivgeris M, RegCOVID Research Group

Biomed Res Int. 2020;2020:9126148

Heritability of the HIV-1 reservoir size and decay under long-term suppressive ART.

Wan C, Bachmann N, Mitov V, Blanquart F, Céspedes SP, Turk T, Neumann K, Beerenwinkel N, Bogojeska J, Fellay J, Roth V, Böni J, Perreau M, Klimkait T, Yerly S, Battegay M, Walti L, Calmy A, Vernazza P, Bernasconi E, Cavassini M, Metzner KJ, Günthard HF, K

Nat Commun. 2020 Nov 2;11(1):5542

Burden, epidemiology, and outcomes of microbiologically confirmed respiratory viral infections in solid organ transplant recipients: a nationwide, multi-season prospective cohort study.

Mombelli M, Lang BM, Neofytos D, Aubert JD, Benden C, Berger C, Boggian K, Egli A, Soccal PM, Kaiser L, Hirzel C, Pascual M, Koller M, Mueller NJ, van Delden C, Hirsch HH, Manuel O, Swiss Transplant Cohort Study.

Am J Transplant. 2020 Oct 31

HCV Genetic Diversity Can Be Used to Infer Infection Recency and Time since Infection.

Carlisle LA, Turk T, Metzner KJ, Mbunkah HA, Shah C, Böni J, Huber M, Braun DL, Fehr J, Salazar-Vizcaya L, Rauch A, Yerly S, Nguyen A, Cavassini M, Stoeckle M, Vernazza P, Bernasconi E, Günthard HF, Kouyos RD

Viruses. 2020 Oct 31;12(11)

Predictors of virological failure and time to viral suppression of first line integrase inhibitor based antiretroviral treatment.

Pyngottu A, Scherrer AU, Kouyos R, Huber M, Hirsch H, Perreau M, Yerly S, Calmy A, Cavassini M, Stöckle M, Furrer H, Vernazza P, Bernasconi E, Günthard HF, Swiss HIV Cohort Study.

Clin Infect Dis. 2020 Oct 24

Septic arthritis of the shoulder due to Ureaplasma urealyticum after emergency caesarean section: a case report.

Mahlouly J, Lhopitallier L, Suttels V, Mueller L, Wernly D, Borens O, Steinmetz S

BMC Infect Dis. 2020 Oct 17;20(1):767

Antibiotic-related gut dysbiosis induces lung immunodepression and worsens lung infection in mice.

Dessein R, Bauduin M, Grandjean T, Le Guern R, Figeac M, Beury D, Faure K, Faveeuw C, Guery B, Gosset P, Kipnis E

Crit Care. 2020 Oct 15;24(1):611

COVID-19 risk stratification algorithms based on sTREM-1 and IL-6 in emergency department.

Van Singer M, Brahier T, Ngai M, Wright J, Weckman AM, Erice C, Meuwly JY, Hugli O, Kain KC, Boillat-Blanco N

J Allergy Clin Immunol. 2020 Oct 9

Compassionate Use of Remdesivir in Pregnant Women with Severe Covid-19.

Burwick RM, Yawetz S, Stephenson KE, Collier AY, Sen P, Blackburn BG, Kojic EM, Hirshberg A, Suarez JF, Sobieszczyk ME, Marks KM, Mazur S, Big C, Manuel O, Morlin G, Rose SJ, Naqvi M, Goldfarb IT, DeZure A, Telep L, Tan SK, Zhao Y, Hahambis T, Hindman J,

Clin Infect Dis. 2020 Oct 8

COVID-19 Pandemics: A Surprising Link to Bread Flour With Collateral Damage to a Prosthetic Heart Valve.

Tozzi P, Kampouri EE, Tzimas G, Prior JO, Monney P, Kamani C, Lamoth F

Circ Cardiovasc Imaging. 2020 Oct;13(10):e011395

Brief Report: Switching From TDF to TAF in HIV/HBV-Coinfected Individuals With Renal Dysfunction-A Prospective Cohort Study.

Surial B, Béguelin C, Chave JP, Stöckle M, Boillat-Blanco N, Doco-Lecompte T, Bernasconi E, Fehr J, Günthard HF, Schmid P, Walti LN, Furrer H, Rauch A, Wandeler G, and the Swiss HIV Cohort Study.

J Acquir Immune Defic Syndr. 2020 Oct 1;85(2):227-232

Diagnostic and therapy of severe Clostridioides difficile infections in the ICU.

Guery B, Barbut F, Tschudin-Sutter S

Curr Opin Crit Care. 2020 Oct;26(5):450-458

Correction to: Swiss consensus recommendations on urinary tract infections in children.

Buettcher M, Trueck J, Niederer-Loher A, Heininger U, Agyeman P, Asner S, Berger C, Bielicki J, Kahlert C, Kottanattu L, Meyer Sauteur PM, Paioni P, Posfay-Barbe K, Relly C, Ritz N, Zimmermann P, Zucol F, Gobet R, Shavit S, Rudin C, Laube G, von Vigier R,

Eur J Pediatr. 2020 Oct 1

Diagnostic Performance of 18F-FDG PET/CT in Native Valve Endocarditis: Systematic Review and Bivariate Meta-Analysis.

Kamani CH, Allenbach G, Jreige M, Pavon AG, Meyer M, Testart N, Firsova M, Fernandes Vieira V, Boughdad S, Nicod Lalonde M, Schaefer N, Guery B, Monney P, Prior JO, Treglia G

Diagnostics (Basel). 2020 Sep 25;10(10)

Bronchial anastomosis dehiscence and stenosis caused by donor-transmitted Mycoplasma hominis infection in a lung transplant recipient: Case report and literature review.

Vecchio M, Koutsokera A, Touilloux B, Perentes JY, Manuel O, Noirez L, Aubert JD, Lenoir A

Transpl Infect Dis. 2020 Sep 25:e13475

Lung ultrasonography for risk stratification in patients with COVID-19: a prospective observational cohort study.

Brahier T, Meuwly JY, Pantet O, Brochu Vez MJ, Gerhard Donnet H, Hartley MA, Hugli O, Boillat-Blanco N

Clin Infect Dis. 2020 Sep 17

Future challenges and chances in the diagnosis and management of invasive mould infections in cancer patients.

Vehreschild JJ, Koehler P, Lamoth F, Prattes J, Rieger C, Rijnders BJA, Teschner D

Med Mycol. 2020 Sep 8

Rapid Diagnosis of Respiratory Tract Infections Using a Point-of-Care Platform Incorporating a Clinical Decision Support Algorithm.

Johannsen B, Mark D, Boillat-Blanco N, Fresco A, Baumgartner D, Zengerle R, Mitsakakis K

Stud Health Technol Inform. 2020 Sep 4;273:234-239

Causes of fever in Tanzanian adults attending outpatient clinics: a prospective cohort study.

Boillat-Blanco N, Mbarack Z, Samaka J, Mlaganile T, Kazimoto T, Mamin A, Genton B, Kaiser L, D'Acremont V

Clin Microbiol Infect. 2020 Sep 4

Piperacillin/tazobactam selects an ampC derepressed E. cloacae complex mutant in a diabetic osteoarticular infection.

Moraz M, Bertelli C, Prod'hom G, Croxatto A, Greub G, Abou-Khalil S, Borens O, Meylan S

Clin Microbiol Infect. 2020 Sep 4

Smartphone App and Carbon Monoxide Self-Monitoring Support for Smoking Cessation: A Randomized Controlled Trial Nested into the Swiss HIV Cohort Study.

Gryaznov D, Chammartin F, Stoeckle M, Anagnostopoulos A, Braun DL, Furrer H, Boillat-Blanco N, Bernasconi E, Schmid P, Nordmann A, Bucher HC

J Acquir Immune Defic Syndr. 2020 Sep 1;85(1):e8-e11

An Adherence-Enhancing Program Increases Retention in Care in the Swiss HIV Cohort.

Kamal S, Glass TR, Doco-Lecompte T, Locher S, Bugnon O, Parienti JJ, Cavassini M, Schneider MP

Open Forum Infect Dis. 2020 Sep;7(9):ofaa323

Telomere Length, Traditional Risk Factors, HIV-related Factors and Coronary Artery Disease Events in Swiss Persons Living with HIV.

Engel T, Raffenberg M, Schoepf IC, Kootstra NA, Reiss P, Thorball CW, Hasse B, Hirzel C, Wissel K, Roth JA, Bernasconi E, Darling KEA, Calmy A, Fellay J, Kouyos RD, Günthard HF, Ledergerber B, Tarr PE, Swiss HIV Cohort Study.

Clin Infect Dis. 2020 Jul 29

Conidiobolus pachyzygosporus invasive pulmonary infection in a patient with acute myeloid leukemia: case report and review of the literature.

Stavropoulou E, Coste AT, Beigelman-Aubry C, Letovanec I, Spertini O, Lovis A, Krueger T, Burger R, Bochud PY, Lamoth F

BMC Infect Dis. 2020 Jul 22;20(1):527

Genetic variation near CXCL12 is associated with susceptibility to HIV-related non-Hodgkin lymphoma.

Thorball CW, Oudot-Mellakh T, Ehsan N, Hammer C, Santoni FA, Niay J, Costagliola D, Goujard C, Meyer L, Wang SS, Hussain SK, Theodorou I, Cavassini M, Rauch A, Battegay M, Hoffmann M, Schmid P, Bernasconi E, Günthard HF, Mohammadi P, McLaren PJ, Rabkin CS

Haematologica. 2020 Jul 16

No evidence of SARS-CoV-2 circulation before the identification of the first Swiss SARS-CoV-2 case.

Lhopitallier L, Brahier T, Opota O, Kronenberg A, Mueller Y, Hügli O, Jaton K, Boillat-Blanco N

Int J Antimicrob Agents. 2020 Jul 16:106100

Emerging echinocandin-resistant Candida albicans and glabrata in Switzerland.

Coste AT, Kritikos A, Li J, Khanna N, Goldenberger D, Garzoni C, Zehnder C, Boggian K, Neofytos D, Riat A, Bachmann D, Sanglard D, Lamoth F, Fungal Infection Network of Switzerland (FUNGINOS).

Infection. 2020 Jul 13

Incidence of invasive pulmonary aspergillosis among critically ill COVID-19 patients.

Lamoth F, Glampedakis E, Boillat-Blanco N, Oddo M, Pagani JL

Clin Microbiol Infect. 2020 Jul 10

Prevalence of potential drug-drug interactions in patients of the Swiss HIV Cohort Study in the era of HIV integrase inhibitors.

Deutschmann E, Bucher HC, Jaeckel S, Gibbons S, McAllister K, Scherrer AU, Braun DL, Cavassini M, Hachfeld A, Calmy A, Battegay M, Cipriani M, Elzi L, Young J, Lopez-Centeno B, Berenguer J, Khoo S, Moffa G, Marzolini C, Swiss HIV Cohort Study.

Clin Infect Dis. 2020 Jul 8

Swiss consensus recommendations on urinary tract infections in children.

Buettcher M, Trueck J, Niederer-Loher A, Heininger U, Agyeman P, Asner S, Berger C, Bielicki J, Kahlert C, Kottanattu L, Sauteur PMM, Paioni P, Posfay-Barbe K, Relly C, Ritz N, Zimmermann P, Zucol F, Gobet R, Shavit S, Rudin C, Laube G, von Vigier R, Neuh

Eur J Pediatr. 2020 Jul 3

COVID-19: A global transplant perspective on successfully navigating a pandemic.

Kumar D, Manuel O, Natori Y, Egawa H, Grossi P, Han SH, Fernández-Ruiz M, Humar A

Am J Transplant. 2020 Jul;20(7):1773-1779

Real-life management of drug-drug interactions between antiretrovirals and statins.

Courlet P, Livio F, Alves Saldanha S, Scherrer A, Battegay M, Cavassini M, Stoeckle M, Decosterd LA, Marzolini C, Swiss HIV Cohort Study .

J Antimicrob Chemother. 2020 Jul 1;75(7):1972-1980

Collapsing glomerulopathy in a COVID-19 patient.

Kissling S, Rotman S, Gerber C, Halfon M, Lamoth F, Comte D, Lhopitallier L, Sadallah S, Fakhouri F

Kidney Int. 2020 Jul;98(1):228-231

Editorial: The Immunology of Sepsis-Understanding Host Susceptibility, Pathogenesis of Disease, and Avenues for Future Treatment.

Schlapbach LJ, Trück J, Roger T

Front Immunol. 2020;11:1263

Review of influenza-associated pulmonary aspergillosis in ICU patients and proposal for a case definition: an expert opinion.

Verweij PE, Rijnders BJA, Brüggemann RJM, Azoulay E, Bassetti M, Blot S, Calandra T, Clancy CJ, Cornely OA, Chiller T, Depuydt P, Giacobbe DR, Janssen NAF, Kullberg BJ, Lagrou K, Lass-Flörl C, Lewis RE, Liu PW, Lortholary O, Maertens J, Martin-Loeches I,

Intensive Care Med. 2020 Jun 22

Hepatocellular Type II Fibrinogen Inclusions in a Patient with Severe COVID-19 and Hepatitis.

Fraga M, Moradpour D, Artru F, Romailler E, Tschopp J, Schneider A, Chtioui H, Neerman-Arbez M, Casini A, Alberio L, Sempoux C

J Hepatol. 2020 Jun 22

Feasibility of intratumoral 165Holmium siloxane delivery to induced U87 glioblastoma in a large animal model, the Yucatan minipig.

Khoshnevis M, Carozzo C, Brown R, Bardiès M, Bonnefont-Rebeix C, Belluco S, Nennig C, Marcon L, Tillement O, Gehan H, Louis C, Zahi I, Buronfosse T, Roger T, Ponce F

PLoS One. 2020;15(6):e0234772

SPHN/PHRT: Forming a Swiss-Wide Infrastructure for Data-Driven Sepsis Research.

Egli A, Battegay M, Büchler AC, Bühlmann P, Calandra T, Eckert P, Furrer H, Greub G, Jakob SM, Kaiser L, Leib SL, Marsch S, Meinshausen N, Pagani JL, Pugin J, Rätsch G, Schrenzel J, Schüpbach R, Siegemund M, Zamboni N, Zbinden R, Zinkernagel A, Borgwardt

Stud Health Technol Inform. 2020 Jun 16;270:1163-1167

Beta-2-glycoprotein I as a biomarker for sepsis in critically ill patients in the intensive care unit: a prospective cohort study.

Schrijver IT, Kemperman H, Roest M, Kesecioglu J, de Lange DW

Crit Care. 2020 Jun 15;24(1):341

Clinical Relevance and Characteristics of Aspergillus calidoustus and Other Aspergillus Species of Section Usti.

Glampedakis E, Erard V, Lamoth F

J Fungi (Basel). 2020 Jun 12;6(2)

High prevalence of peribronchial focal lesions of airway invasive aspergillosis in hematological cancer patients with prolonged neutropenia.

Casutt A, Couchepin J, Brunel AS, Lovis A, Bochud PY, Keller N, Lamoth F, Beigelman-Aubry C

Br J Radiol. 2020 Jun 4:20190693

Effect of C-Reactive Protein-Guided Antibiotic Treatment Duration, 7-Day Treatment, or 14-Day Treatment on 30-Day Clinical Failure Rate in Patients With Uncomplicated Gram-Negative Bacteremia: A Randomized Clinical Trial.

von Dach E, Albrich WC, Brunel AS, Prendki V, Cuvelier C, Flury D, Gayet-Ageron A, Huttner B, Kohler P, Lemmenmeier E, McCallin S, Rossel A, Harbarth S, Kaiser L, Bochud PY, Huttner A

JAMA. 2020 Jun 2;323(21):2160-2169

Development and validation of a multiplex UHPLC-MS/MS assay with stable isotopic internal standards for the monitoring of the plasma concentrations of the antiretroviral drugs bictegravir, cabotegravir, doravirine, and rilpivirine in people living with HI

Courlet P, Alves Saldanha S, Cavassini M, Marzolini C, Choong E, Csajka C, Günthard HF, André P, Buclin T, Desfontaine V, Decosterd LA

J Mass Spectrom. 2020 Jun;55(6):e4506

Cause-specific mortality after diagnosis of cancer among HIV-positive patients: A collaborative analysis of cohort studies.

Trickey A, May MT, Gill MJ, Grabar S, Vehreschild J, Wit FWNM, Bonnet F, Cavassini M, Abgrall S, Berenguer J, Wyen C, Reiss P, Grabmeier-Pfistershammer K, Guest JL, Shepherd L, Teira R, d'Arminio Monforte A, Del Amo J, Justice A, Costagliola D, Sterne JAC

Int J Cancer. 2020 Jun 1;146(11):3134-3146

An Early Warning Score to predict ICU admission in COVID-19 positive patients.

Meylan S, Akrour R, Regina J, Bart PA, Dami F, Calandra T

J Infect. 2020 May 28

Impact of the Beta-Glucan Test on Management of Intensive Care Unit Patients at Risk for Invasive Candidiasis.

Kritikos A, Poissy J, Croxatto A, Bochud PY, Pagani JL, Lamoth F

J Clin Microbiol. 2020 May 26;58(6)

First experience of SARS-CoV-2 infections in solid organ transplant recipients in the Swiss Transplant Cohort Study.

Tschopp J, L'Huillier AG, Mombelli M, Mueller NJ, Khanna N, Garzoni C, Meloni D, Papadimitriou-Olivgeris M, Neofytos D, Hirsch HH, Schuurmans MM, Müller T, Berney T, Steiger J, Pascual M, Manuel O, van Delden C, Swiss Transplant Cohort Study (STCS).

Am J Transplant. 2020 May 15

Drug-Resistant Bacteremia after Fecal Microbiota Transplant.

Bleibtreu A, Kapel N, Galperine T, French Group of Faecal Microbiota Transplantation.

N Engl J Med. 2020 May 14;382(20):1961

Cohort-derived machine learning models for individual prediction of chronic kidney disease in people living with HIV: a prospective multicentre cohort study.

Roth JA, Radevski G, Marzolini C, Rauch A, Günthard HF, Kouyos RD, Fux CA, Scherrer AU, Calmy A, Cavassini M, Kahlert CR, Bernasconi E, Bogojeska J, Battegay M

J Infect Dis. 2020 May 9

[SARS-CoV-2, a point in the storm].

Tadini E, Papamidimitriou-Olivgeris M, Opota O, Moulin E, Lamoth F, Manuel O, Lhopitallier L, Jaton K, Croxatto A, Grandbastien B, Senn L, Guery B

Rev Med Suisse. 2020 May 6;16(692):917-923

Incidentally discovered COVID-19 pneumonia: the role of diagnostic imaging.

Pozzessere C, Rotzinger DC, Ghaye B, Lamoth F, Beigelman-Aubry C

Eur Radiol. 2020 May 4

When antibiotics fail: a clinical and microbiological perspective on antibiotic tolerance and persistence of Staphylococcus aureus.

Kuehl R, Morata L, Meylan S, Mensa J, Soriano A

J Antimicrob Chemother. 2020 May 1;75(5):1071-1086

Aging does not impact drug--drug interaction magnitudes with antiretrovirals.

Stader F, Decosterd L, Stoeckle M, Cavassini M, Battegay M, Saldanha SA, Marzolini C, Courlet P, the Swiss HIV Cohort Study*.

AIDS. 2020 May 1;34(6):949-952

Ability of quantitative PCR to discriminate Pneumocystis jirovecii pneumonia from colonization.

Perret T, Kritikos A, Hauser PM, Guiver M, Coste AT, Jaton K, Lamoth F

J Med Microbiol. 2020 May;69(5):705-711

[SARS-CoV-2 infection and solid organ transplantation].

Golshayan D, Aubert JD, Hullin R, Moradpour D, Venetz JP, Manuel O, Pascual M

Rev Med Suisse. 2020 Apr 29;16(N° 691-2):815-818

[Pediatric impact of COVID-19].

L'Huillier AG, Asner SA

Rev Med Suisse. 2020 Apr 29;16(N° 691-2):839-841

Phylogenetic Cluster Analysis Identifies Virological and Behavioral Drivers of HIV Transmission in MSM.

Bachmann N, Kusejko K, Nguyen H, Chaudron SE, Kadelka C, Turk T, Böni J, Perreau M, Klimkait T, Yerly S, Battegay M, Rauch A, Ramette A, Vernazza P, Bernasconi E, Cavassini M, Günthard HF, Kouyos RD, Swiss HIV Cohort Study.

Clin Infect Dis. 2020 Apr 17

Coronavirus et fragilité.

Kaiser L, Calandra T

Rev Med Suisse. 2020 Apr 15;16(690):711

[New antibiotics for the clinical setting, an overview].

Meylan S, Portillo Tunon V, Guery B

Rev Med Suisse. 2020 Apr 15;16(690):713-718

[Infectious risks of new immunosuppressive biologicals : which prophylaxis and when ?]

Rochat Stettler L, Nguyen A, Manuel O, Van Delden C

Rev Med Suisse. 2020 Apr 15;16(690):724-730

[Rubor, calor, dolor, tumor : skin and soft tissue infections].

Kampouri E, Filippidis P, Lhopitallier L, Pham TT, Schuhler C, Toutous Trellu L, Mombelli M, Huttner B

Rev Med Suisse. 2020 Apr 15;16(690):732-738

[Stigma and HIV: relevant for everyone].

Cobos Manuel I, Jackson-Perry D, Courvoisier C, Bluntschli C, Carel S, Muggli E, Waelti Da Costa V, Kampouri E, Cavassini M, Darling KEA

Rev Med Suisse. 2020 Apr 15;16(690):744-748

[Side effects of selected antibiotics, not to be missed !]

Kritikos A, Zanella MC, Huttner B, Boillat-Blanco N

Rev Med Suisse. 2020 Apr 15;16(690):719-723

Influence of Drug-Drug Interactions on the Pharmacokinetics of Atorvastatin and Its Major Active Metabolite ortho-OH-Atorvastatin in Aging People Living with HIV.

Courlet P, Decosterd LA, Alves Saldanha S, Cavassini M, Stader F, Stoeckle M, Buclin T, Marzolini C, Csajka C, Guidi M, Swiss HIV Cohort Study.

Clin Pharmacokinet. 2020 Apr 12

Random forest machine learning algorithm predicts virologic outcomes among HIV infected adults in Lausanne, Switzerland using electronically monitored combined antiretroviral treatment adherence.

Kamal S, Urata J, Cavassini M, Liu H, Kouyos R, Bugnon O, Wang W, Schneider MP

AIDS Care. 2020 Apr 8:1-7

Pharmacokinetic analysis of an extended-pulsed fidaxomicin regimen for the treatment of Clostridioides (Clostridium) difficile infection in patients aged 60 years and older in the EXTEND randomized controlled trial.

Guery B, Georgopali A, Karas A, Kazeem G, Michon I, Wilcox MH, Cornely OA

J Antimicrob Chemother. 2020 Apr 1;75(4):1014-1018

Blood and lymph node dissemination of clonal genome-intact HIV-1 DNA sequences during suppressive antiretroviral therapy.

Kuo HH, Banga R, Lee GQ, Gao C, Cavassini M, Corpataux JM, Blackmer JE, Zur Wiesch JS, Yu XG, Pantaleo G, Perreau M, Lichterfeld M

J Infect Dis. 2020 Apr 1

Differences in social and mental well-being of long-term survivors among people who inject drugs and other participants in the Swiss HIV Cohort Study: 1980-2018.

Kusejko K, Marzel A, Nguyen H, Chaudron SE, Bachmann N, Weber R, Bruggmann P, Roth JA, Bernasconi E, Calmy A, Cavassini M, Bregenzer A, Böni J, Yerly S, Klimkait T, Perreau M, Walti LN, Günthard HF, Kouyos RD, Swiss HIV Cohort Study.

Antivir Ther. 2020 Apr 1

Changes in renal function after switching from TDF to TAF in HIV-infected individuals: a prospective cohort study.

Surial B, Ledergerber B, Calmy A, Cavassini M, Günthard HF, Kovari H, Stöckle M, Bernasconi E, Schmid P, Fux CA, Furrer H, Rauch A, Wandeler G, Swiss HIV Cohort Study.

J Infect Dis. 2020 Mar 19

Risk factors for candidemia: a prospective matched case-control study.

Poissy J, Damonti L, Bignon A, Khanna N, Von Kietzell M, Boggian K, Neofytos D, Vuotto F, Coiteux V, Artru F, Zimmerli S, Pagani JL, Calandra T, Sendid B, Poulain D, van Delden C, Lamoth F, Marchetti O, Bochud PY, FUNGINOS., Allfun French Study Groups.

Crit Care. 2020 Mar 18;24(1):109

The role of HIV asymptomatic status when starting ART on adherence and treatment outcomes and implications for test and treat: the Swiss HIV Cohort Study.

Glass TR, Günthard H, Calmy A, Bernasconi E, Scherrer AU, Battegay M, Steffen A, Böni J, Yerly S, Klimkait T, Cavassini M, Furrer H, Swiss HIV Cohort Study.

Clin Infect Dis. 2020 Mar 11

Invasive aspergillosis due to Aspergillus section Usti: a multicenter retrospective study.

Glampedakis E, Cassaing S, Fekkar A, Dannaoui E, Bougnoux ME, Bretagne S, Neofytos D, Schreiber PW, Hennequin C, Morio F, Shadrivova O, Bongomin F, Fernández-Ruiz M, Bellanger AP, Arikan-Akdagli S, Erard V, Aigner M, Paolucci M, Khanna N, Charpentier E, B

Clin Infect Dis. 2020 Mar 10

Performance of the T2Candida Panel for the Diagnosis of Intra-abdominal Candidiasis.

Lamoth F, Clancy CJ, Tissot F, Squires K, Eggimann P, Flückiger U, Siegemund M, Orasch C, Zimmerli S, Calandra T, Marchetti O, Nguyen MH, Bochud PY

Open Forum Infect Dis. 2020 Mar;7(3):ofaa075

Immunosuppressed gardener pricked by roses grows Legionella longbeachae.

Desgranges F, Coste AT, Wernly D, Dufour J, Opota O, Meylan S

Lancet. 2020 Feb 22;395(10224):604

The Gut-Lung Axis in Health and Respiratory Diseases: A Place for Inter-Organ and Inter-Kingdom Crosstalks.

Enaud R, Prevel R, Ciarlo E, Beaufils F, Wieërs G, Guery B, Delhaes L

Front Cell Infect Microbiol. 2020;10:9

Erratum for Kannan et al., "Comparative Genomics for the Elucidation of Multidrug Resistance in Candida lusitaniae".

Kannan A, Asner SA, Trachsel E, Kelly S, Parker J, Sanglard D

mBio. 2020 Feb 11;11(1)

Impact of Genetic and Nongenetic Factors on Body Mass Index and Waist-Hip Ratio Change in HIV-Infected Individuals Initiating Antiretroviral Therapy.

Barceló C, Guidi M, Thorball CW, Hammer C, Chaouch A, Scherrer AU, Hasse B, Cavassini M, Furrer H, Calmy A, Haubitz S, Bernasconi E, Buclin T, Fellay J, Tarr PE, Csajka C, Swiss HIV Cohort Study .

Open Forum Infect Dis. 2020 Jan;7(1):ofz464

Clinical Reasoning: Rapidly progressive gait disorder and cranial nerves involvement in a 9-year-old boy.

Lipp A, Adam C, Brouland JP, Messerer M, Armengaud JB, Asner S, Poloni C, Beck-Popovic M, Roulet-Perez E, Lebon S

Neurology. 2020 Jan 21;94(3):e330-e334

[Infectious diseases : « less is more »].

Tschopp J, Guéry B, Boillat Blanco N

Rev Med Suisse. 2020 Jan 15;16(676-7):55-58

[Novelties in HIV prevention and treatment in 2019].

Kampouri E, Papadimitriou-Olivgeris M, Calmy A, Ciuffi A, Cavassini M

Rev Med Suisse. 2020 Jan 15;16(676-7):92-98

Repeated Syphilis Episodes in HIV-Infected Men Who Have Sex With Men: A Multicenter Prospective Cohort Study on Risk Factors and the Potential Role of Syphilis Immunity.

Roth JA, Franzeck FC, Balakrishna S, Lautenschlager S, Thurnheer MC, Trellu LT, Cavassini M, Vernazza P, Bernasconi E, Braun D, Kouyos RD, Battegay M, Swiss HIV Cohort Study (SHCS) .

Open Forum Infect Dis. 2020 Jan;7(1):ofaa019

Burden and Timeline of Infectious Diseases in the First Year After Solid Organ Transplantation in the Swiss Transplant Cohort Study.

van Delden C, Stampf S, Hirsch HH, Manuel O, Meylan P, Cusini A, Hirzel C, Khanna N, Weisser M, Garzoni C, Boggian K, Berger C, Nadal D, Koller M, Saccilotto R, Mueller NJ, Swiss Transplant Cohort Study.

Clin Infect Dis. 2020 Jan 9

Influenza in solid-organ transplant recipients: epidemiology, presentation, and outcomes.

Mombelli M, Kampouri E, Manuel O

Expert Rev Anti Infect Ther. 2020 Jan 7

Vitamin D deficiency is common in kidney transplant recipients, but is not associated with infections after transplantation.

Schreiber PW, Kusejko K, Bischoff-Ferrari HA, Boggian K, Bonani M, van Delden C, Enriquez N, Fehr T, Garzoni C, Hirsch HH, Hirzel C, Manuel O, Meylan P, Saleh L, Weisser M, Mueller NJ, Swiss Transplant Cohort Study (STCS).

Clin Transplant. 2020 Jan 6:e13778

Pharmacokinetic profiles of boosted darunavir, dolutegravir and lamivudine in aging people living with HIV.

Courlet P, Stader F, Guidi M, Alves Saldanha S, Stoeckle M, Cavassini M, Battegay M, Buclin T, Decosterd LA, Marzolini C, Swiss HIV Cohort Study.

AIDS. 2020 Jan 1;34(1):103-108

Use of whole-genome sequencing in the molecular investigation of care-associated HCoV-OC43 infections in a hematopoietic stem cell transplant unit.

Beury D, Fléchon L, Maurier F, Caboche S, Varré JS, Touzet H, Faure K, Dubuisson J, Hot D, Guery B, Goffard A

J Clin Virol. 2020 Jan;122:104206

2019

Trained immunity confers broad-spectrum protection against bacterial infections.

Ciarlo E, Heinonen T, Théroude C, Asgari F, Le Roy D, Netea MG, Roger T

J Infect Dis. 2019 Dec 31

Comparative Genomics for the Elucidation of Multidrug Resistance in Candida lusitaniae.

Kannan A, Asner SA, Trachsel E, Kelly S, Parker J, Sanglard D

mBio. 2019 Dec 24;10(6)

Herpes simplex encephalitis in adult patients with MASP-2 deficiency.

Bibert S, Piret J, Quinodoz M, Collinet E, Zoete V, Michielin O, Menasria R, Meylan P, Bihl T, Erard V, Fellmann F, Rivolta C, Boivin G, Bochud PY

PLoS Pathog. 2019 Dec;15(12):e1008168

Correction for Cornu et al., "Evaluation of Mass Spectrometry-Based Detection of Panfungal Serum Disaccharide for Diagnosis of Invasive Fungal Infections: Results from a Collaborative Study Involving Six European Clinical Centers".

Cornu M, Sendid B, Mery A, François N, Mikulska M, Letscher-Bru V, De Carolis E, Damonti L, Titecat M, Bochud PY, Alanio A, Sanguinetti M, Viscoli C, Herbrecht R, Guerardel Y, Poulain D

J Clin Microbiol. 2019 Dec 23;58(1)

Polypharmacy, Drug-Drug Interactions, and Inappropriate Drugs: New Challenges in the Aging Population With HIV.

Courlet P, Livio F, Guidi M, Cavassini M, Battegay M, Stoeckle M, Buclin T, Alves Saldanha S, Csajka C, Marzolini C, Decosterd L, Swiss HIV Cohort Study .

Open Forum Infect Dis. 2019 Dec;6(12):ofz531

Parameter estimates for trends and patterns of excess mortality among persons on antiretroviral therapy in high-income European settings.

Trickey A, van Sighem A, Stover J, Abgrall S, Grabar S, Bonnet F, Berenguer J, Wyen C, Casabona J, d'Arminio Monforte A, Cavassini M, Del Amo J, Zangerle R, Gill MJ, Obel N, Sterne JAC, May MT

AIDS. 2019 Dec 15;33 Suppl 3:S271-S281

Assessment of Radio-Induced Damage in Endothelial Cells Irradiated with 40 kVp, 220 kVp, and 4 MV X-rays by Means of Micro and Nanodosimetric Calculations.

Tang N, Bueno M, Meylan S, Perrot Y, Tran HN, Freneau A, Dos Santos M, Vaurijoux A, Gruel G, Bernal MA, Bordage MC, Emfietzoglou D, Francis Z, Guatelli S, Ivanchenko V, Karamitros M, Kyriakou I, Shin WG, Incerti S, Villagrasa C

Int J Mol Sci. 2019 Dec 9;20(24)

Corrigendum to: Impact of the M184V/I Mutation on the Efficacy of Abacavir/Lamivudine/Dolutegravir Therapy in HIV Treatment-Experienced Patients.

Olearo F, Nguyen H, Bonnet F, Yerly S, Wandeler G, Stoeckle M, Cavassini M, Scherrer A, Costagliola D, Schmid P, Günthard HF, Bernasconi E, Boeni J, D'arminio Monforte A, Zazzi M, Rossetti B, Neau D, Bellecave P, Rijnders B, Reiss P, Wit F, Kouyos R, Calm

Open Forum Infect Dis. 2019 Dec;6(12):ofz500

Revision and Update of the Consensus Definitions of Invasive Fungal Disease From the European Organization for Research and Treatment of Cancer and the Mycoses Study Group Education and Research Consortium.

Donnelly JP, Chen SC, Kauffman CA, Steinbach WJ, Baddley JW, Verweij PE, Clancy CJ, Wingard JR, Lockhart SR, Groll AH, Sorrell TC, Bassetti M, Akan H, Alexander BD, Andes D, Azoulay E, Bialek R, Bradsher RW, Bretagne S, Calandra T, Caliendo AM, Castagnola

Clin Infect Dis. 2019 Dec 5

Global guideline for the diagnosis and management of mucormycosis: an initiative of the European Confederation of Medical Mycology in cooperation with the Mycoses Study Group Education and Research Consortium.

Cornely OA, Alastruey-Izquierdo A, Arenz D, Chen SCA, Dannaoui E, Hochhegger B, Hoenigl M, Jensen HE, Lagrou K, Lewis RE, Mellinghoff SC, Mer M, Pana ZD, Seidel D, Sheppard DC, Wahba R, Akova M, Alanio A, Al-Hatmi AMS, Arikan-Akdagli S, Badali H, Ben-Ami

Lancet Infect Dis. 2019 Dec;19(12):e405-e421

rs34567942 a Novel Susceptibility Single Nucleotide Polymorphism for Cutaneous Squamous Cell Carcinoma in Organ Transplant Recipients.

Kuzmanov A, Qi W, Stenz N, Bochud PY, Kutalik Z, Wojtowicz A, Hofbauer G

Acta Derm Venereol. 2019 Dec 1;99(13):1303-1304

Dual Deletion of the Sirtuins SIRT2 and SIRT3 Impacts on Metabolism and Inflammatory Responses of Macrophages and Protects From Endotoxemia.

Heinonen T, Ciarlo E, Rigoni E, Regina J, Le Roy D, Roger T

Front Immunol. 2019;10:2713

Real-life food-safety behavior and incidence of foodborne infections in solid organ transplant recipients.

Lindup M, van den Bogaart L, Golshayan D, Aubert JD, Vionnet J, Regamey J, Pascual M, Manuel O, Mombelli M

Am J Transplant. 2019 Nov 25

Parameter estimates for trends and patterns of excess mortality among persons on ART in high-income european settings.

Trickey A, van Sighem A, Stover J, Abgrall S, Grabar S, Bonnet F, Berenguer J, Wyen C, Casabona J, Monforte AD'A, Cavassini M, Del Amo J, Zangerle R, Gill MJ, Obel N, Sterne JAC, May MT

AIDS. 2019 Nov 19

Antibodies against HPV16E6 oncoprotein in the Swiss HIV cohort study: Kinetics and anal cancer risk prediction.

Combes JD, Clifford GM, Günthard HF, Hauser C, Darling KEA, Valladares P, Battegay M, Waldeck F, Bernasconi E, Bertisch B, Hirsch HH, Brenner N, Waterboer T, Scherrer AU, Swiss HIV Cohort Study.

Int J Cancer. 2019 Nov 12

Microbiological Characterization and Clinical Outcomes After Extended-Pulsed Fidaxomicin Treatment for Clostridioides difficile Infection in the EXTEND Study.

Wilcox MH, Cornely OA, Guery B, Longshaw C, Georgopali A, Karas A, Kazeem G, Palacios-Fabrega JA, Vehreschild MJGT

Open Forum Infect Dis. 2019 Nov;6(11):ofz436

Identification of an Endoglin Variant Associated With HCV-Related Liver Fibrosis Progression by Next-Generation Sequencing.

About F, Bibert S, Jouanguy E, Nalpas B, Lorenzo L, Rattina V, Zarhrate M, Hanein S, Munteanu M, Müllhaupt B, Semela D, Semmo N, Casanova JL, Theodorou I, Sultanik P, Poynard T, Pol S, Bochud PY, Cobat A, Abel L, Swiss Hepatitis C Cohort Study Group., Fre

Front Genet. 2019;10:1024

Therapeutic Challenges of Non-Aspergillus Invasive Mold Infections in Immunosuppressed Patients.

Lamoth F, Kontoyiannis DP

Antimicrob Agents Chemother. 2019 Nov;63(11)

Rates and predictors of switching to tenofovir alafenamide-containing ART in a nationwide cohort.

Surial B, Cavassini M, Calmy A, Fehr J, Stöckle M, Bernasconi E, Roth B, Fux CA, Kovari H, Furrer H, Rauch A, Wandeler G, Swiss HIV Cohort Study.

BMC Infect Dis. 2019 Oct 10;19(1):834

Imaging patterns of Pneumocystis jirovecii pneumonia in HIV-positive and renal transplant patients - a multicentre study.

Christe A, Walti L, Charimo J, Rauch A, Furrer H, Meyer A, Huynh-Do U, Heverhagen JT, Mueller NJ, Cavassini M, Mombelli M, van Delden C, Frauenfelder T, Montet X, Beigelman-Aubry C, Arampatzis S, Ebner L

Swiss Med Wkly. 2019 Sep 23;149:w20130

Impact of the Dual Deletion of the Mitochondrial Sirtuins SIRT3 and SIRT5 on Anti-microbial Host Defenses.

Heinonen T, Ciarlo E, Le Roy D, Roger T

Front Immunol. 2019;10:2341

Phenotypic, biochemical and genetic analysis of KPC-41, a KPC-3 variant conferring resistance to ceftazidime-avibactam and exhibiting reduced carbapenemase activity.

Mueller L, Masseron A, Prod'Hom G, Galperine T, Greub G, Poirel L, Nordmann P

Antimicrob Agents Chemother. 2019 Sep 16

Self-reported neurocognitive impairment in people living with HIV: Characterizing clusters of patients with similar changes in self-reported neurocognitive impairment 2013-2017 in the Swiss HIV Cohort Study.

Kusejko K, Salazar-Vizcaya L, Braun DL, Tarr PE, Bernasconi E, Doco-Lecompte T, Cavassini M, Schmid P, Du Pasquier R, Hauser C, Günthard HF, Kouyos RD, Swiss HIV Cohort Study.

Clin Infect Dis. 2019 Sep 3

UHPLC-MS/MS assay for simultaneous determination of amlodipine, metoprolol, pravastatin, rosuvastatin, atorvastatin with its active metabolites in human plasma, for population-scale drug-drug interactions studies in people living with HIV.

Courlet P, Spaggiari D, Desfontaine V, Cavassini M, Alves Saldanha S, Buclin T, Marzolini C, Csajka C, Decosterd LA

J Chromatogr B Analyt Technol Biomed Life Sci. 2019 Sep 1;1125:121733

Nearly Complete Genome Sequence of a Novel Phlebovirus-Like Virus Detected in a Human Plasma Sample by High-Throughput Sequencing.

Laubscher F, Cordey S, Hartley MA, Vieille G, Boillat-Blanco N, Samaka J, Mlaganile T, d'Acremont V, Kaiser L

Microbiol Resour Announc. 2019 Aug 29;8(35)

Clostridioides difficile: diagnosis and treatments.

Guery B, Galperine T, Barbut F

BMJ. 2019 Aug 20;366:l4609

HIV Transmission Chains Exhibit Greater HLA-B Homogeneity Than Randomly Expected.

Nguyen H, Thorball CW, Fellay J, Böni J, Yerly S, Perreau M, Klimkait T, Kusejko K, Bachmann N, Chaudron SE, Paioni P, Thurnheer MC, Battegay M, Cavassini M, Vernazza P, Bernasconi E, Günthard HF, Kouyos R, Swiss HIV Cohort Study.

J Acquir Immune Defic Syndr. 2019 Aug 15;81(5):508-515

Procalcitonin and lung ultrasonography point-of-care testing to decide on antibiotic prescription in patients with lower respiratory tract infection in primary care: protocol of a pragmatic cluster randomized trial.

Lhopitallier L, Kronenberg A, Meuwly JY, Locatelli I, Dubois J, Marti J, Mueller Y, Senn N, D'Acremont V, Boillat-Blanco N

BMC Pulm Med. 2019 Aug 6;19(1):143

Mortality from suicide among people living with HIV and the general Swiss population: 1988-2017.

Ruffieux Y, Lemsalu L, Aebi-Popp K, Calmy A, Cavassini M, Fux CA, Günthard HF, Marzolini C, Scherrer A, Vernazza P, Keiser O, Egger M, Swiss HIV Cohort Study and the Swiss National Cohort.

J Int AIDS Soc. 2019 Aug;22(8):e25339

Early Antimicrobial Therapy for Sepsis: Does Each Hour Really Count?

Guery B, Calandra T

Semin Respir Crit Care Med. 2019 Aug;40(4):447-453

Determinants of HIV-1 reservoir size and long-term dynamics during suppressive ART.

Bachmann N, von Siebenthal C, Vongrad V, Turk T, Neumann K, Beerenwinkel N, Bogojeska J, Fellay J, Roth V, Kok YL, Thorball CW, Borghesi A, Parbhoo S, Wieser M, Böni J, Perreau M, Klimkait T, Yerly S, Battegay M, Rauch A, Hoffmann M, Bernasconi E, Cavassi

Nat Commun. 2019 Jul 19;10(1):3193

Impact of the M184V/I Mutation on the Efficacy of Abacavir/Lamivudine/Dolutegravir Therapy in HIV Treatment-Experienced Patients.

Olearo F, Nguyen H, Bonnet F, Yerly S, Wandeler G, Stoeckle M, Cavassini M, Scherrer A, Costagiola D, Schmid P, Günthard HF, Bernasconi E, Boeni J, D'arminio Monforte A, Zazzi M, Rossetti B, Neau D, Bellecave P, Rijnders B, Reiss P, Wit F, Kouyos R, Calmy

Open Forum Infect Dis. 2019 Oct;6(10):ofz330

Successful treatment with daptomycin and ceftaroline of MDR Staphylococcus aureus native valve endocarditis: a case report.

Duss FR, Garcia de la Mària C, Croxatto A, Giulieri S, Lamoth F, Manuel O, Miró JM

J Antimicrob Chemother. 2019 Jul 11

Cross-Sectional and Cumulative Longitudinal Central Nervous System Penetration Effectiveness Scores Are Not Associated With Neurocognitive Impairment in a Well Treated Aging Human Immunodeficiency Virus-Positive Population in Switzerland.

Santos GMA, Locatelli I, Métral M, Calmy A, Lecompte TD, Nadin I, Hauser C, Cusini A, Hasse B, Kovari H, Tarr P, Stoeckle M, Fux C, Di Benedetto C, Schmid P, Darling KEA, Du Pasquier R, Cavassini M, Neurocognitive Assessment in the Metabolic and Aging Coh

Open Forum Infect Dis. 2019 Jul;6(7):ofz277

Macrophage migration inhibitory factor regulates TLR4 expression and modulates TCR/CD3-mediated activation in CD4+ T lymphocytes.

Alibashe-Ahmed M, Roger T, Serre-Beinier V, Berishvili E, Reith W, Bosco D, Berney T

Sci Rep. 2019 Jun 28;9(1):9380

Immunosuppression reduction in liver and kidney transplant recipients with suspected bacterial infection: A multinational survey.

Shepshelovich D, Tau N, Green H, Rozen-Zvi B, Issaschar A, Falcone M, Coussement J, Zusman O, Manuel O, Mor E, Torre-Cisneros J, Yahav D

Transpl Infect Dis. 2019 Jun 26:e13134

Link between Heat Shock Protein 90 and the Mitochondrial Respiratory Chain in the Caspofungin Stress Response of Aspergillus fumigatus.

Aruanno M, Bachmann D, Sanglard D, Lamoth F

Antimicrob Agents Chemother. 2019 Jul;63(7)

Viral Diversity Based on Next-Generation Sequencing of HIV-1 Provides Precise Estimates of Infection Recency and Time Since Infection.

Carlisle LA, Turk T, Kusejko K, Metzner KJ, Leemann C, Schenkel CD, Bachmann N, Posada S, Beerenwinkel N, Böni J, Yerly S, Klimkait T, Perreau M, Braun DL, Rauch A, Calmy A, Cavassini M, Battegay M, Vernazza P, Bernasconi E, Günthard HF, Kouyos RD, Swiss

J Infect Dis. 2019 Jun 19;220(2):254-265

Lack of association of Aspergillus colonization with the development of bronchiolitis obliterans syndrome in lung transplant recipients: An international cohort study.

Law N, Hamandi B, Fegbeutel C, Silveira FP, Verschuuren EA, Ussetti P, Chin-Hong PV, Sole A, Holmes-Liew CL, Billaud EM, Grossi PA, Manuel O, Levine DJ, Barbers RG, Hadjiliadis D, Younus M, Aram J, Chaparro C, Singer LG, Husain S

J Heart Lung Transplant. 2019 Jun 19

A Systematic Phylogenetic Approach to Study the Interaction of HIV-1 With Coinfections, Noncommunicable Diseases, and Opportunistic Diseases.

Kusejko K, Bachmann N, Chaudron SE, Nguyen H, Braun DL, Hampel B, Battegay M, Bernasconi E, Calmy A, Cavassini M, Hoffmann M, Böni J, Yerly S, Klimkait T, Perreau M, Rauch A, Günthard HF, Kouyos RD, Swiss HIV Cohort Study .

J Infect Dis. 2019 Jun 19;220(2):244-253

IL-4 polymorphism influences susceptibility to Pneumocystis jirovecii pneumonia in HIV-positive patients.

Wójtowicz A, Bibert S, Taffé P, Bernasconi E, Furrer H, Günthard HF, Hoffmann M, Osthoff M, Cavassini M, Bochud PY, Swiss HIV Cohort Study.

AIDS. 2019 Jun 18

Compassionate Use of Letermovir in a 2-Year-Old Immunocompromised Child With Resistant Cytomegalovirus Disease.

Pérez Marín M, Decosterd LA, Andre P, Buclin T, Mercier T, Murray K, Rizzi M, Meylan P, Jaton-Ogay P, Opota O, Gengler C, Perez MH, Natterer J, Asner SA

J Pediatric Infect Dis Soc. 2019 Jun 11

Changing Trends in International Versus Domestic HCV Transmission in HIV-Positive Men Who Have Sex With Men: A Perspective for the Direct-Acting Antiviral Scale-Up Era.

Salazar-Vizcaya L, Kouyos RD, Metzner KJ, Caraballo Cortes K, Böni J, Shah C, Fehr J, Braun DL, Bernasconi E, Mbunkah HA, Hoffmann M, Labhardt N, Cavassini M, Rougemont M, Günthard HF, Keiser O, Rauch A, Swiss HIV Cohort Study .

J Infect Dis. 2019 Jun 5;220(1):91-99

Understanding and Enhancing Sepsis Survivorship: Priorities for Research and Practice.

Prescott HC, Iwashyna TJ, Blackwood B, Calandra T, Chlan LL, Choong K, Connolly B, Dark P, Ferrucci L, Finfer S, Girard TD, Hodgson C, Hopkins RO, Hough CL, Jackson JC, Machado FR, Marshall JC, Misak C, Needham DM, Panigrahi P, Reinhart K, Yende S, Zafont

Am J Respir Crit Care Med. 2019 Jun 4

Extended-pulsed fidaxomicin versus vancomycin for Clostridium difficile infection: EXTEND study subgroup analyses.

Cornely OA, Vehreschild MJGT, Adomakoh N, Georgopali A, Karas A, Kazeem G, Guery B

Eur J Clin Microbiol Infect Dis. 2019 Jun;38(6):1187-1194

Escitalopram population pharmacokinetics in people living with human immunodeficiency virus and in the psychiatric population: Drug-drug interactions and probability of target attainment.

Courlet P, Guidi M, Glatard A, Alves Saldanha S, Cavassini M, Buclin T, Marzolini C, Eap CB, Decosterd LA, Csajka C, Swiss HIV Cohort Study.

Br J Clin Pharmacol. 2019 May 29

Echinocandins for the treatment of invasive aspergillosis: from laboratory to bedside.

Aruanno M, Glampedakis E, Lamoth F

Antimicrob Agents Chemother. 2019 May 28

Population pharmacokinetics of dolutegravir: influence of drug-drug interactions in a real-life setting.

Barcelo C, Aouri M, Courlet P, Guidi M, Braun DL, Günthard HF, Piso RJ, Cavassini M, Buclin T, Decosterd LA, Csajka C, Swiss HIV Cohort Study .

J Antimicrob Chemother. 2019 May 22

Prognostic accuracy of sTREM-1-based algorithms in febrile adults presenting to Tanzanian outpatient clinics.

Richard-Greenblatt M, Boillat-Blanco N, Zhong K, Mbarack Z, Samaka J, Mlaganile T, Kazimoto T, D'Acremont V, Kain KC

Clin Infect Dis. 2019 May 18

Emtricitabine and lamivudine concentrations in saliva: a simple suitable test for treatment adherence.

Courlet P, Decosterd LA, Brown JA, Alves Saldanha S, Marzolini C, Cavassini M, Stoeckle M, Csajka C, Labhardt ND, Calmy A, Swiss HIV Cohort Study .

J Antimicrob Chemother. 2019 May 7

Different impact of rATG induction on CMV infection risk in D+R- and R+ KTRs.

Kaminski H, Jarque M, Halfon M, Taton B, Di Ascia L, Pfirmann P, Visentin J, Garrigue I, Déchanet-Merville J, Moreau JF, Crespo E, Montero N, Melilli E, Meneghini M, Pascual M, Couzi L, Manuel O, Bestard O, Merville P

J Infect Dis. 2019 Apr 26

Evaluation of Mass Spectrometry-Based Detection of Panfungal Serum Disaccharide for Diagnosis of Invasive Fungal Infections: Results from a Collaborative Study Involving Six European Clinical Centers.

Cornu M, Sendid B, Mery A, François N, Malgorzata M, Letscher-Bru V, De Carolis E, Damonti L, Titecat M, Bochud PY, Alanio A, Sanguinetti M, Viscoli C, Herbrecht R, Guerardel Y, Poulain D

J Clin Microbiol. 2019 May;57(5)

The comparative effectiveness of NRTI-sparing dual regimens in emulated trials using observational data from the Swiss HIV Cohort Study.

Young J, Scherrer AU, Calmy A, Tarr PE, Bernasconi E, Cavassini M, Hachfeld A, Vernazza P, Günthard HF, Bucher HC, Swiss HIV Cohort Study.

Antivir Ther. 2019 Apr 15

Retrospective study on the usefulness of pulse oximetry for the identification of young children with severe illnesses and severe pneumonia in a rural outpatient clinic of Papua New Guinea.

Blanc J, Locatelli I, Rarau P, Mueller I, Genton B, Boillat-Blanco N, Gehri M, Senn N

PLoS One. 2019;14(4):e0213937

La personnalisation : une approche ancrée dans les gènes de l’infectiologie.

Bochud PY, Kaiser L, Calandra T

Rev Med Suisse. 2019 Apr 10;15(646):763-764

[Customised infectiology - Phage therapy: from theory to clinical evidence].

Desgranges F, Bochud PY, Resch G

Rev Med Suisse. 2019 Apr 10;15(646):771-775

[Customised infectiology - Fecal microbiota transplantation : following the Clostridioides difficile pathway].

Galperine TK, Guery B

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[Customised infectiology - Immunogenetics].

Neofytos D, Bibert S, Bochud PY

Rev Med Suisse. 2019 Apr 10;15(646):766-770

Contribution of genetic background and clinical D:A:D risk score to chronic kidney disease in Swiss HIV-positive persons with normal baseline estimated glomerular filtration rate.

Dietrich LG, Barceló C, Thorball CW, Ryom L, Burkhalter F, Hasse B, Furrer H, Weisser M, Steffen A, Bernasconi E, Cavassini M, de Seigneux S, Csajka C, Fellay J, Ledergerber B, Tarr PE, Swiss HIV CohortS Study.

Clin Infect Dis. 2019 Apr 6

Erratum to: Clinical characteristics, audiological and neurodevelopmental outcomes of newborns with congenital cytomegalovirus infection.

Kobas M, Bickle Graz M, Truttmann AC, Giannoni E, Meylan P, Asner SA

Swiss Med Wkly. 2019 Mar 25;149:w20075

Clusters of sexual behaviour in HIV-positive men who have sex with men reveal highly dissimilar time trends.

Salazar-Vizcaya L, Kusejko K, Schmidt AJ, Carrillo-Montoya G, Nicca D, Wandeler G, Braun DL, Fehr J, Darling KEA, Bernasconi E, Schmid P, Günthard HF, Kouyos RD, Rauch A

Clin Infect Dis. 2019 Mar 15

Emergence of drug resistance in the Swiss HIV Cohort Study under potent antiretroviral therapy is observed in socially disadvantaged patients.

Abela IA, Scherrer AU, Böni J, Yerly S, Klimkait T, Perreau M, Hirsch HH, Furrer H, Calmy A, Schmid P, Cavassini M, Bernasconi E, Günthard HF, Swiss HIV Cohort Study.

Clin Infect Dis. 2019 Mar 7

Diagnosis and treatment of invasive fungal infections: looking ahead.

Sanguinetti M, Posteraro B, Beigelman-Aubry C, Lamoth F, Dunet V, Slavin M, Richardson MD

J Antimicrob Chemother. 2019 Mar 1;74(Supplement_2):ii27-ii37

RNA respiratory viral infections in solid organ transplant recipients: Guidelines from the American Society of Transplantation Infectious Diseases Community of Practice.

Manuel O, Estabrook M, American Society of Transplantation Infectious Diseases Community of Practice.

Clin Transplant. 2019 Feb 28:e13511

[Consensus for the management of infectious diseases among asylum seekers and detainees in the canton of Vaud].

Chastonay O, Masserey É, Dory É, Beaupère P, Mazza-Stalder J, De Vallière S, L'hostis Y, Bodenmann P

Rev Med Suisse. 2019 Feb 27;15(640):466-472

Myeloid-Derived Suppressor Cells in Sepsis.

Schrijver IT, Théroude C, Roger T

Front Immunol. 2019;10:327

Clostridium difficile infection trials: what is the primary endpoint?

Guery B

Lancet Infect Dis. 2019 Jan 29

Pneumocystis jirovecii Pneumonia in an Infant: The Tip of the Iceberg.

Boillat L, Angelini F, Crucis-Armengaud A, Asner SA, Rochat I

Clin Pediatr (Phila). 2019 Jan 18:9922818825141

Quality of life and utility decrement associated with Clostridium difficile infection in a French hospital setting.

Barbut F, Galperine T, Vanhems P, Le Monnier A, Durand-Gasselin B, Canis F, Jeanbat V, Duburcq A, Alami S, Bensoussan C, Fagnani F

Health Qual Life Outcomes. 2019 Jan 11;17(1):6

[Diagnosis, prevention and treatment of HIV : what's new in 2018 ?]

D'Incau S, Viala B, Ciuffi A, Cavassini M, Calmy A

Rev Med Suisse. 2019 Jan 9;15(N° 632-633):107-112

A five-day course of oral antibiotics followed by faecal transplantation to eradicate carriage of multidrug-resistant Enterobacteriaceae: A Randomized Clinical Trial.

Huttner BD, de Lastours V, Wassenberg M, Maharshak N, Mauris A, Galperine T, Zanichelli V, Kapel N, Bellanger A, Olearo F, Duval X, Armand L, Carmeli Y, Bonten M, Fantin B, Harbarth S, R-Gnosis WP3 study group.

Clin Microbiol Infect. 2019 Jan 4

Risk stratification of immunocompromised children, including pediatric transplant recipients at risk of severe respiratory syncytial virus disease.

Science M, Akseer N, Asner S, Allen U

Pediatr Transplant. 2019 Jan 3:e13336

Burden of Streptococcus pneumoniae sepsis in children after introduction of pneumococcal conjugate vaccines - a prospective population-based cohort study.

Asner SA, Agyeman PKA, Gradoux E, Posfay-Barbe KM, Heininger U, Giannoni E, Crisinel PA, Stocker M, Bernhard-Stirnemann S, Niederer-Loher A, Kahlert CR, Hasters P, Relly C, Baer W, Aebi C, Schlapbach LJ, Berger C, Swiss Paediatric Sepsis Study group.

Clin Infect Dis. 2019 Jan 2

Detection of dicistroviruses RNA in blood of febrile Tanzanian children.

Cordey S, Laubscher F, Hartley MA, Junier T, Pérez-Rodriguez FJ, Keitel K, Vieille G, Samaka J, Mlaganile T, Kagoro F, Boillat-Blanco N, Mbarack Z, Docquier M, Brito F, Eibach D, May J, Sothmann P, Aldrich C, Lusingu J, Tapparel C, D'Acremont V, Kaiser L

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2018

Dengue fever in Dar es Salaam, Tanzania: clinical features and outcome in populations of black and non-black racial category.

Boillat-Blanco N, Klaassen B, Mbarack Z, Samaka J, Mlaganile T, Masimba J, Franco Narvaez L, Mamin A, Genton B, Kaiser L, D'Acremont V

BMC Infect Dis. 2018 Dec 12;18(1):644

Determinants of Restoration of CD4 and CD8 Cell Counts and their Ratio in HIV-1 Positive Individuals with Sustained Virological Suppression on Antiretroviral Therapy.

Gras L, May M, Ryder LP, Trickey A, Helleberg M, Obel N, Thiebaut R, Guest J, Gill J, Crane H, Lima VD, Monforte AD, Sterling TR, Miro J, Moreno S, Stephan C, Smith C, Tate J, Shepherd L, Saag M, Rieger A, Gillor D, Cavassini M, Montero M, Ingle SM, Reiss

J Acquir Immune Defic Syndr. 2018 Dec 3

Non-targeted HIV testing in the emergency department: not just how but where.

Tan R, Hugli O, Cavassini M, Darling K

Expert Rev Anti Infect Ther. 2018 Dec;16(12):893-905

Rational approach in the management of Pseudomonas aeruginosa infections.

Bassetti M, Vena A, Russo A, Croxatto A, Calandra T, Guery B

Curr Opin Infect Dis. 2018 Dec;31(6):578-586

Diagnostic performance of conventional RDT and ultra-sensitive RDT for malaria diagnosis in febrile outpatients in Tanzania.

Hofmann NE, Moniz CA, Holzschuh A, Keitel K, Boillat-Blanco N, Kagoro F, Samaka J, Mbarack Z, Ding XC, González IJ, Genton B, D'Acremont V, Felger I

J Infect Dis. 2018 Nov 24

Sirtuin 5 Deficiency Does Not Compromise Innate Immune Responses to Bacterial Infections.

Heinonen T, Ciarlo E, Théroude C, Pelekanou A, Herderschee J, Le Roy D, Roger T

Front Immunol. 2018;9:2675

[Systemic biomarkers in respiratory tract infections].

Balmpouzis Z, Diamanti E, Kritikos A, Guery B, Nicod LP

Rev Med Suisse. 2018 Nov 14;14(627):2074-2078

Developing definitions for invasive fungal diseases in critically ill adult patients in intensive care units. Protocol of the FUNgal infections Definitions in ICU patients (FUNDICU) project.

Bassetti M, Scudeller L, Giacobbe DR, Lamoth F, Righi E, Zuccaro V, Grecchi C, Rebuffi C, Akova M, Alastruey-Izquierdo A, Arikan-Akdagli S, Azoulay E, Blot SI, Cornely OA, Lass-Flörl C, Koehler P, Cuenca-Estrella M, de Lange DW, De Rosa FG, De Waele JJ, D

Mycoses. 2018 Nov 13

Impact of MBL2 gene polymorphisms on the risk of infection in solid organ transplant recipients: a systematic review and meta-analysis.

Fernández-Ruiz M, Giménez E, Lora D, Aguado JM, Pascual M, Manuel O

Am J Transplant. 2018 Oct 31

The fungal ligand chitin directly binds TLR2 and triggers inflammation dependent on oligomer size.

Fuchs K, Cardona Gloria Y, Wolz OO, Herster F, Sharma L, Dillen CA, Täumer C, Dickhöfer S, Bittner Z, Dang TM, Singh A, Haischer D, Schlöffel MA, Koymans KJ, Sanmuganantham T, Krach M, Roger T, Le Roy D, Schilling NA, Frauhammer F, Miller LS, Nürnberger T

EMBO Rep. 2018 Oct 18

Efficacy of antifungal monotherapies and combinations against Aspergillus calidoustus.

Glampedakis E, Coste AT, Aruanno M, Bachmann D, Delarze E, Erard V, Lamoth F

Antimicrob Agents Chemother. 2018 Oct 15

Effect of renal clearance and continuous renal replacement therapy on appropriateness of recommended meropenem dosing regimens in critically ill patients with susceptible life-threatening infections.

Burger R, Guidi M, Calpini V, Lamoth F, Decosterd L, Robatel C, Buclin T, Csajka C, Marchetti O

J Antimicrob Chemother. 2018 Dec 1;73(12):3413-3422

Antibiotics for Sepsis-Finding the Equilibrium.

Klompas M, Calandra T, Singer M

JAMA. 2018 Oct 9;320(14):1433-1434

Effect of national HIV testing recommendations and local interventions on HIV testing practices in a Swiss university hospital: a retrospective analysis between 2012 and 2015.

Lazzarino T, Martenet S, Mamin R, Du Pasquier RA, Peters S, Perreau M, Muller O, Hugli O, Cavassini M, Darling KEA

BMJ Open. 2018 Oct 3;8(10):e021203

Erratum for Williams et al., "Investigation of the Plasma Virome from Cases of Unexplained Febrile Illness in Tanzania from 2013 to 2014: a Comparative Analysis between Unbiased and VirCapSeq-VERT High-Throughput Sequencing Approaches".

Williams SH, Cordey S, Bhuva N, Laubscher F, Hartley MA, Boillat-Blanco N, Mbarack Z, Samaka J, Mlaganile T, Jain K, d'Acremont V, Kaiser L, Lipkin WI

mSphere. 2018 Sep 19;3(5)

Inferring the age difference in HIV transmission pairs by applying phylogenetic methods on the HIV transmission network of the Swiss HIV Cohort Study.

Kusejko K, Kadelka C, Marzel A, Battegay M, Bernasconi E, Calmy A, Cavassini M, Hoffmann M, Böni J, Yerly S, Klimkait T, Perreau M, Rauch A, Günthard HF, Kouyos RD, Swiss HIV Cohort Study .

Virus Evol. 2018 Jul;4(2):vey024

IFNL3/4 polymorphisms are associated with AIDS-related Kaposi's sarcoma.

Bibert S, Wojtowicz A, Taffé P, Tarr PE, Bernasconi E, Furrer H, Günthard HF, Hoffmann M, Kaiser L, Osthoff M, Fellay J, Cavassini M, Bochud PY, and the Swiss HIV Cohort Study.

AIDS. 2018 Nov 28;32(18):2759-2765

Tracing HIV-1 strains that imprint broadly neutralizing antibody responses.

Kouyos RD, Rusert P, Kadelka C, Huber M, Marzel A, Ebner H, Schanz M, Liechti T, Friedrich N, Braun DL, Scherrer AU, Weber J, Uhr T, Baumann NS, Leemann C, Kuster H, Chave JP, Cavassini M, Bernasconi E, Hoffmann M, Calmy A, Battegay M, Rauch A, Yerly S, A

Nature. 2018 Sep;561(7723):406-410

Predictors of residual antimalarial drugs in the blood in community surveys in Tanzania.

Gallay J, Pothin E, Mosha D, Lutahakana E, Mazuguni F, Zuakulu M, Decosterd LA, Genton B

PLoS One. 2018;13(9):e0202745

Immunogenicity and safety of double versus standard dose of the seasonal influenza vaccine in solid-organ transplant recipients: A randomized controlled trial.

Mombelli M, Rettby N, Perreau M, Pascual M, Pantaleo G, Manuel O

Vaccine. 2018 Oct 1;36(41):6163-6169

Comprehensive antibiotic-linked mutation assessment by resistance mutation sequencing (RM-seq).

Guérillot R, Li L, Baines S, Howden B, Schultz MB, Seemann T, Monk I, Pidot SJ, Gao W, Giulieri S, Gonçalves da Silva A, D'Agata A, Tomita T, Peleg AY, Stinear TP, Howden BP

Genome Med. 2018 Aug 31;10(1):63

Pneumocystis jirovecii pneumonia in solid organ transplant recipients: a descriptive analysis for the Swiss Transplant Cohort.

Neofytos D, Hirzel C, Boely E, Lecompte T, Khanna N, Mueller NJ, Boggian K, Cusini A, Manuel O, van Delden C, Swiss Transplant Cohort Study.

Transpl Infect Dis. 2018 Aug 28:e12984

Genomic exploration of sequential clinical isolates reveals a distinctive molecular signature of persistent Staphylococcus aureus bacteraemia.

Giulieri SG, Baines SL, Guerillot R, Seemann T, Gonçalves da Silva A, Schultz M, Massey RC, Holmes NE, Stinear TP, Howden BP

Genome Med. 2018 Aug 23;10(1):65

Investigation of the Plasma Virome from Cases of Unexplained Febrile Illness in Tanzania from 2013 to 2014: a Comparative Analysis between Unbiased and VirCapSeq-VERT High-Throughput Sequencing Approaches.

Williams SH, Cordey S, Bhuva N, Laubscher F, Hartley MA, Boillat-Blanco N, Mbarack Z, Samaka J, Mlaganile T, Jain K, d'Acremont V, Kaiser L, Lipkin WI

mSphere. 2018 Aug 22;3(4)

Population-based outcome analysis of diffuse large B-cell lymphoma in people living with HIV infection and competent individuals.

Conconi A, Zucca E, Margiotta-Casaluci G, Darling K, Hasse B, Battegay M, Staehelin C, Novak U, Schmid P, Scherrer A, Dirnhofer S, Kwee I, Nassi L, Cavalli F, Gaidano G, Bertoni F, Bernasconi E, Swiss HIV Cohort study (SHCS).

Hematol Oncol. 2018 Aug 16

High Cure Rates With Grazoprevir-Elbasvir With or Without Ribavirin Guided by Genotypic Resistance Testing Among Human Immunodeficiency Virus/Hepatitis C Virus-coinfected Men Who Have Sex With Men.

Braun DL, Hampel B, Kouyos R, Nguyen H, Shah C, Flepp M, Stöckle M, Conen A, Béguelin C, Künzler-Heule P, Nicca D, Schmid P, Delaloye J, Rougemont M, Bernasconi E, Rauch A, Günthard HF, Böni J, Fehr JS, Swiss HIV Cohort Study .

Clin Infect Dis. 2018 Aug 13

Vitamin D status and risk of infections after liver transplantation in the Swiss Transplant Cohort Study.

Schreiber PW, Bischoff-Ferrari HA, Boggian K, van Delden C, Enriquez N, Fehr T, Garzoni C, Hirsch HH, Hirzel C, Manuel O, Meylan P, Saleh L, Weisser M, Mueller NJ, Swiss Transplant Cohort Study (STCS).

Transpl Int. 2018 Aug 12

Toxoplasmosis in Transplant Recipients, Europe, 2010-2014.

Robert-Gangneux F, Meroni V, Dupont D, Botterel F, Garcia JMA, Brenier-Pinchart MP, Accoceberry I, Akan H, Abbate I, Boggian K, Bruschi F, Carratalà J, David M, Drgona L, Djurković-Djaković O, Farinas MC, Genco F, Gkrania-Klotsas E, Groll AH, Guy E, Hirze

Emerg Infect Dis. 2018 Aug;24(8):1497-1504

Let's add invasive aspergillosis to the list of influenza complications.

Lamoth F, Calandra T

Lancet Respir Med. 2018 Oct;6(10):733-735

Molecular characterization of Treponema pallidum subsp. pallidum in Switzerland and France with a new multilocus sequence typing scheme.

Grillová L, Bawa T, Mikalová L, Gayet-Ageron A, Nieselt K, Strouhal M, Sednaoui P, Ferry T, Cavassini M, Lautenschlager S, Dutly F, Pla-Díaz M, Krützen M, González-Candelas F, Bagheri HC, Šmajs D, Arora N, Bosshard PP

PLoS One. 2018;13(7):e0200773

Cost estimates for HIV care and patient characteristics for health resource utilisation from linkage of claims data with the Swiss HIV Cohort Study.

Leon-Reyes S, Schäfer J, Früh M, Schwenkglenks M, Reich O, Schmidlin K, Staehelin C, Battegay M, Cavassini M, Hasse B, Bernasconi E, Calmy A, Hoffmann M, Schoeni-Affolter F, Zhao H, Bucher HC

Clin Infect Dis. 2018 Jul 18

IRF5 Is a Key Regulator of Macrophage Response to Lipopolysaccharide in Newborns.

Schneider A, Weier M, Herderschee J, Perreau M, Calandra T, Roger T, Giannoni E

Front Immunol. 2018;9:1597

CD32+ and PD-1+ Lymph Node CD4 T Cells Support Persistent HIV-1 Transcription in Treated Aviremic Individuals.

Noto A, Procopio FA, Banga R, Suffiotti M, Corpataux JM, Cavassini M, Fenwick C, Gottardo R, Perreau M, Pantaleo G

J Virol. 2018 Oct 15;92(20)

Efficacy and safety of continuous infusions with elastomeric pumps for outpatient parenteral antimicrobial therapy (OPAT): an observational study.

Voumard R, Gardiol C, André P, Arensdorff L, Cochet C, Boillat-Blanco N, Decosterd L, Buclin T, de Vallière S

J Antimicrob Chemother. 2018 Sep 1;73(9):2540-2545

Impact of Direct-Acting Antivirals on the Burden of HCV Infection Among Persons Who Inject Drugs and Men Who Have Sex With Men in the Swiss HIV Cohort Study.

Salazar-Vizcaya L, Wandeler G, Fehr J, Braun D, Cavassini M, Stoeckle M, Bernasconi E, Hoffmann M, Rougemont M, Béguelin C, Rauch A, Swiss HIV Cohort Study .

Open Forum Infect Dis. 2018 Jul;5(7):ofy154

The Candidate Blood Stage Malaria Vaccine P27A Induces a Robust Humoral Response in a Fast Track to the Field Phase I Trial in Exposed and Non Exposed Volunteers.

Steiner-Monard V, Kamaka K, Karoui O, Roethlisberger S, Audran R, Daubenberger C, Fayet-Mello A, Erdmann-Voisin A, Felger I, Geiger K, Govender L, Houard S, Huber E, Mayor C, Mkindi C, Portevin D, Rusch S, Schmidlin S, Tiendrebeogo RW, Theisen M, Thierry

Clin Infect Dis. 2018 Jun 26

Clinical risk factors for invasive aspergillosis in lung transplant recipients: Results of an international cohort study.

Aguilar CA, Hamandi B, Fegbeutel C, Silveira FP, Verschuuren EA, Ussetti P, Chin-Hong PV, Sole A, Holmes-Liew C, Billaud EM, Grossi PA, Manuel O, Levine DJ, Barbers RG, Hadjiliadis D, Singer LG, Husain S

J Heart Lung Transplant. 2018 Oct;37(10):1226-1234

Genetic immune and inflammatory markers associated with diabetes in solid organ transplant recipients.

Quteineh L, Wójtowicz A, Bochud PY, Crettol S, Vandenberghe F, Venetz JP, Manuel O, Golshayan D, Lehmann R, Mueller NJ, Binet I, van Delden C, Steiger J, Mohacsi P, Dufour JF, Soccal PM, Kutalik Z, Marques-Vidal P, Vollenweider P, Recher M, Hess C, Pascua

Am J Transplant. 2018 Jun 19

Accuracy of Sensititre YeastOne echinocandins epidemiological cut-off values for identification of FKS mutant Candida albicans and Candida glabrata: a ten year national survey of the Fungal Infection Network of Switzerland (FUNGINOS).

Kritikos A, Neofytos D, Khanna N, Schreiber PW, Boggian K, Bille J, Schrenzel J, Mühlethaler K, Zbinden R, Bruderer T, Goldenberger D, Pfyffer G, Conen A, Van Delden C, Zimmerli S, Sanglard D, Bachmann D, Marchetti O, Lamoth F, Fungal Infection Network of

Clin Microbiol Infect. 2018 Nov;24(11):1214.e1-1214.e4

HIV and Aging - Perhaps Not as Dramatic as We Feared?

Engel T, Raffenberg M, Marzolini C, Cavassini M, Kovari H, Hasse B, Tarr PE

Gerontology. 2018;64(5):446-456

Prognostic value of quickSOFA as a predictor of 28-day mortality among febrile adult patients presenting to emergency departments in Dar es Salaam, Tanzania.

Boillat-Blanco N, Mbarack Z, Samaka J, Mlaganile T, Mamin A, Genton B, Kaiser L, Calandra T, D'Acremont V

PLoS One. 2018;13(6):e0197982

Clinical characteristics, audiological and neurodevelopmental outcomes of newborns with congenital cytomegalovirus infection.

Kobas M, Bickle Graz M, Truttmann AC, Giannoni E, Meylan P, Asner SA

Swiss Med Wkly. 2018;148:w14627

Missed opportunities for HIV testing among patients newly presenting for HIV care at a Swiss university hospital: a retrospective analysis.

Lhopitallier L, Moulin E, Hugli O, Cavassini M, Darling KEA

BMJ Open. 2018 Jun 12;8(6):e019806

Pentraxin-3 polymorphisms and invasive mold infections in acute leukemia patients with intensive chemotherapy.

Brunel AS, Wójtowicz A, Lamoth F, Spertini O, Neofytos D, Calandra T, Marchetti O, Bochud PY

Haematologica. 2018 Nov;103(11):e527-e530

Re: "Comparison of antipseudomonal betalactams for febrile neutropenia empiric therapy: systematic review and network metaanalysis" by Horita et al.

Averbuch D, Orasch C, Mikulska M, Livermore DM, Viscoli C, Gyssens IC, Kern WV, Klyasova G, Marchetti O, Engelhard D, Akova M, Calandra T, Cordonnier C, ECIL4 antibacterial group, a joint venture of EBMT, EORTC, ICHS, ESGICH/ESCMID and ELN.

Clin Microbiol Infect. 2018 Jun;24(6):662-663

Hyperglycaemia is inversely correlated with live M. bovis BCG-specific CD4+ T cell responses in Tanzanian adults with latent or active tuberculosis.

Boillat-Blanco N, Tumbo AN, Perreau M, Amelio P, Ramaiya KL, Mganga M, Schindler C, Gagneux S, Reither K, Probst-Hensch N, Pantaleo G, Daubenberger C, Portevin D

Immun Inflamm Dis. 2018 Jun;6(2):345-353

Editorial for ESCMID Study Group for Infections in Compromised Hosts (ESGICH) Consensus Document on the safety of targeted and biological therapies: an infectious diseases perspective.

Aguado JM, Manuel O

Clin Microbiol Infect. 2018 Jun;24 Suppl 2:S1

How to manage Pseudomonas aeruginosa infections.

Bassetti M, Vena A, Croxatto A, Righi E, Guery B

Drugs Context. 2018;7:212527

No Effect of Pegylated Interferon-α on Total HIV-1 DNA Load in HIV-1/HCV Coinfected Patients.

Strouvelle VP, Braun DL, Vongrad V, Scherrer AU, Kok YL, Kouyos RD, Stöckle M, Rauch A, Darling K, Hoffmann M, Metzner KJ, Günthard HF, Zurich Primary HIV Infection Study and the Swiss HIV Cohort Study .

J Infect Dis. 2018 May 25;217(12):1883-1888

Appropriateness of malaria diagnosis and treatment for fever episodes according to patient history and anti-malarial blood measurement: a cross-sectional survey from Tanzania.

Gallay J, Mosha D, Lutahakana E, Mazuguni F, Zuakulu M, Decosterd LA, Genton B, Pothin E

Malar J. 2018 May 21;17(1):209

Pediatric Investigators Collaborative Network on Infections in Canada (PICNIC) Study of Respiratory Syncytial Virus-Associated Deaths in Pediatric Patients in Canada: 2003 to 2013.

Tam J, Papenburg J, Fanella S, Asner S, Barton M, Bergeron C, Desai S, Hui C, Foo C, Langley JM, Leifso K, Ma ML, Pernica J, Robinson J, Singh R, Tapiero B, Allen U

Clin Infect Dis. 2018 May 16

Long-term trends in CD4 cell counts, CD8 cell counts, and the CD4: CD8 ratio: ART Cohort Collaboration (ART-CC) Study.

Hughes RA, May MT, Tilling K, Taylor N, Wittkop L, Reiss P, Gill J, Schommers P, Costagliola D, Guest JL, Lima VD, Monforte AD, Smith C, Cavassini M, Saag M, Sterling TR, Sterne JAC

AIDS. 2018 May 3

[Travelers' exposure to HIV and HIV-infected travelers].

Boillat-Blanco N, Cavassini M, Genton B

Rev Med Suisse. 2018 May 2;14(605):918-921

[Travel Apps: applications and websites of travel medicine].

Genton B, D'Acremont V

Rev Med Suisse. 2018 May 2;14(605):938-940

Toll-Like Receptor 4 (TLR4) and Triggering Receptor Expressed on Myeloid Cells-2 (TREM-2) Activation Balance Astrocyte Polarization into a Proinflammatory Phenotype.

Rosciszewski G, Cadena V, Murta V, Lukin J, Villarreal A, Roger T, Ramos AJ

Mol Neurobiol. 2018 May;55(5):3875-3888

Fluconazole non-susceptible breakthrough candidemia after prolonged low-dose prophylaxis: a prospective FUNGINOS study.

Orasch C, Mertz D, Garbino J, van Delden C, Emonet S, Schrenzel J, Zimmerli S, Damonti L, Mühlethaler K, Imhof A, Ruef C, Fehr J, Zbinden R, Boggian K, Bruderer T, Flückiger U, Conen A, Khanna N, Frei R, Bregenzer T, Lamoth F, Erard V, Bochud PY, Calandra

J Infect. 2018 May;76(5):489-495

First case of Candida auris in Switzerland: discussion about preventive strategies.

Riat A, Neofytos D, Coste A, Harbarth S, Bizzini A, Grandbastien B, Pugin J, Lamoth F

Swiss Med Wkly. 2018;148:w14622

Single-Cell RNA-Seq Reveals Transcriptional Heterogeneity in Latent and Reactivated HIV-Infected Cells.

Golumbeanu M, Cristinelli S, Rato S, Munoz M, Cavassini M, Beerenwinkel N, Ciuffi A

Cell Rep. 2018 Apr 24;23(4):942-950

Diagnosis and management of asymptomatic bacteriuria in kidney transplant recipients: a survey of current practice in Europe.

Coussement J, Maggiore U, Manuel O, Scemla A, López-Medrano F, Nagler EV, Aguado JM, Abramowicz D, European Renal Association-European Dialysis Transplant Association (ERA-EDTA) Developing Education Science and Care for Renal Transplantation in European S

Nephrol Dial Transplant. 2018 Apr 9

LILRB1 polymorphisms influence posttransplant HCMV susceptibility and ligand interactions.

Yu K, Davidson CL, Wójtowicz A, Lisboa L, Wang T, Airo AM, Villard J, Buratto J, Sandalova T, Achour A, Humar A, Boggian K, Cusini A, van Delden C, Egli A, Manuel O, Mueller N, Bochud PY, Swiss Transplant Cohort Study., Burshtyn DN

J Clin Invest. 2018 Apr 2;128(4):1523-1537

Clinical significance of post-prophylaxis cytomegalovirus infection in lung transplant recipients.

Jaamei N, Koutsokera A, Pasquier J, Mombelli M, Meylan P, Pascual M, Aubert JD, Manuel O

Transpl Infect Dis. 2018 Aug;20(4):e12893

Immune Monitoring for CMV in Transplantation.

Yong MK, Lewin SR, Manuel O

Curr Infect Dis Rep. 2018 Mar 14;20(4):4

Microbial metagenome of urinary tract infection.

Moustafa A, Li W, Singh H, Moncera KJ, Torralba MG, Yu Y, Manuel O, Biggs W, Venter JC, Nelson KE, Pieper R, Telenti A

Sci Rep. 2018 Mar 12;8(1):4333

Low 5-year cumulative incidence of post-transplant lymphoproliferative disorders after solid organ transplantation in Switzerland.

Steiner R, Kridel R, Giostra E, McKee T, Achermann R, Mueller N, Manuel O, Dickenmann M, Schuurmans MM, de Leval L, Fehr T, Tinguely M, Binet I, Cogliatti S, Haralamvieva E, Koller M, The Swiss Transplant Cohort Study Stcs, Dietrich PY

Swiss Med Wkly. 2018;148:w14596

Targeted versus non-targeted HIV testing offered via electronic questionnaire in a Swiss emergency department: A randomized controlled study.

Gillet C, Darling KEA, Senn N, Cavassini M, Hugli O

PLoS One. 2018;13(3):e0190767

Burden of severe RSV disease among immunocompromised children and adults: a 10 year retrospective study.

Chatzis O, Darbre S, Pasquier J, Meylan P, Manuel O, Aubert JD, Beck-Popovic M, Masouridi-Levrat S, Ansari M, Kaiser L, Posfay-Barbe KM, Asner SA

BMC Infect Dis. 2018 Mar 6;18(1):111

Are privacy-enhancing technologies for genomic data ready for the clinic? A survey of medical experts of the Swiss HIV Cohort Study.

Raisaro JL, McLaren PJ, Fellay J, Cavassini M, Klersy C, Hubaux JP, Swiss HIV Cohort Study.

J Biomed Inform. 2018 Mar;79:1-6

Correction to: Catheter retention as a consequence rather than a cause of unfavorable outcome in candidemia.

Damonti L, Erard V, Garbino J, Schrenzel J, Zimmerli S, Mühlethaler K, Imhof A, Zbinden R, Fehr J, Boggian K, Bruderer T, Flückiger U, Frei R, Orasch C, Conen A, Khanna N, Bregenzer T, Bille J, Lamoth F, Marchetti O, Bochud PY, Fungal Infection Network of

Intensive Care Med. 2018 Mar;44(3):405-407

Trends in HCV treatment uptake, efficacy and impact on liver fibrosis in the Swiss HIV Cohort Study.

Béguelin C, Suter A, Bernasconi E, Fehr J, Kovari H, Bucher HC, Stoeckle M, Cavassini M, Rougemont M, Schmid P, Wandeler G, Rauch A, Swiss HIV Cohort Study.

Liver Int. 2018 Mar;38(3):424-431

Extended-pulsed fidaxomicin versus vancomycin for Clostridium difficile infection in patients 60 years and older (EXTEND): a randomised, controlled, open-label, phase 3b/4 trial.

Guery B, Menichetti F, Anttila VJ, Adomakoh N, Aguado JM, Bisnauthsing K, Georgopali A, Goldenberg SD, Karas A, Kazeem G, Longshaw C, Palacios-Fabrega JA, Cornely OA, Vehreschild MJGT, EXTEND Clinical Study Group.

Lancet Infect Dis. 2018 Mar;18(3):296-307

Role of bi-weekly serum galactomannan screening for the diagnosis of invasive aspergillosis in haematological cancer patients.

Couchepin J, Brunel AS, Jaton K, Meylan P, Bochud PY, Lamoth F

Mycoses. 2018 Jun;61(6):350-354

Blood CXCR3+ CD4 T Cells Are Enriched in Inducible Replication Competent HIV in Aviremic Antiretroviral Therapy-Treated Individuals.

Banga R, Procopio FA, Ruggiero A, Noto A, Ohmiti K, Cavassini M, Corpataux JM, Paxton WA, Pollakis G, Perreau M

Front Immunol. 2018;9:144

Multinational case-control study of risk factors for the development of late invasive pulmonary aspergillosis following kidney transplantation.

López-Medrano F, Fernández-Ruiz M, Silva JT, Carver PL, van Delden C, Merino E, Pérez-Saez MJ, Montero M, Coussement J, de Abreu Mazzolin M, Cervera C, Santos L, Sabé N, Scemla A, Cordero E, Cruzado-Vega L, Martín-Moreno PL, Len Ó, Rudas E, Ponce de León

Clin Microbiol Infect. 2018 Feb;24(2):192-198

Recommendations for Management of Endemic Diseases and Travel Medicine in Solid-Organ Transplant Recipients and Donors: Latin America.

Clemente WT, Pierrotti LC, Abdala E, Morris MI, Azevedo LS, López-Vélez R, Cuenca-Estrella M, Torre-Cisneros J, Petersen E, Camargo LFA, Wright AJ, Beeching NJ, Vilela EG, Santoro-Lopes G, Len O, Stucchi RSB, Manuel O, Faria LC, Leblebicioglu H, Huprikar

Transplantation. 2018 Feb;102(2):193-208

Vaccine Recommendations for Solid-Organ Transplant Recipients and Donors.

Stucchi RSB, Lopes MH, Kumar D, Manuel O

Transplantation. 2018 Feb;102(2S Suppl 2):S72-S80

The Candida auris Alert: Facts and Perspectives.

Lamoth F, Kontoyiannis DP

J Infect Dis. 2018 Jan 30;217(4):516-520

Convergent Evolution Driven by Rifampin Exacerbates the Global Burden of Drug-Resistant Staphylococcus aureus.

Guérillot R, Gonçalves da Silva A, Monk I, Giulieri S, Tomita T, Alison E, Porter J, Pidot S, Gao W, Peleg AY, Seemann T, Stinear TP, Howden BP

mSphere. 2018 Jan-Feb;3(1)

Bone metabolism dynamics in the early post-transplant period following kidney and liver transplantation.

Schreiber PW, Bischoff-Ferrari HA, Boggian K, Bonani M, van Delden C, Enriquez N, Fehr T, Garzoni C, Hirsch HH, Hirzel C, Manuel O, Meylan P, Saleh L, Weisser M, Mueller NJ, Swiss Transplant Cohort Study (STCS).

PLoS One. 2018;13(1):e0191167

Where is the greatest impact of uncontrolled HIV infection on AIDS and non-AIDS events in HIV?

Mocroft A, Laut K, Reiss P, Gatell J, Ormaasen V, Cavassini M, Hadziosmanovic V, Mansinho K, Pradier C, Vasylyev M, Mitsura V, Vandekerckhove L, Ostergaard L, Clarke A, Degen O, Mulcahy F, Castagna A, Sthoeger Z, Flamholc L, Sedláček D, Mozer-Lisewska I,

AIDS. 2018 Jan 14;32(2):205-215

Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T-Cell Decline, and Per-Parasite Pathogenicity.

Bertels F, Marzel A, Leventhal G, Mitov V, Fellay J, Günthard HF, Böni J, Yerly S, Klimkait T, Aubert V, Battegay M, Rauch A, Cavassini M, Calmy A, Bernasconi E, Schmid P, Scherrer AU, Müller V, Bonhoeffer S, Kouyos R, Regoes RR, Swiss HIV Cohort Study.

Mol Biol Evol. 2018 Jan 1;35(1):27-37

Changes in the epidemiological landscape of invasive candidiasis.

Lamoth F, Lockhart SR, Berkow EL, Calandra T

J Antimicrob Chemother. 2018 Jan 1;73(suppl_1):i4-i13

Voriconazole and squamous cell carcinoma after lung transplantation: A multicenter study.

Hamandi B, Fegbeutel C, Silveira FP, Verschuuren EA, Younus M, Mo J, Yan J, Ussetti P, Chin-Hong PV, Solé A, Holmes-Liew CL, Billaud EM, Grossi PA, Manuel O, Levine DJ, Barbers RG, Hadjiliadis D, Aram J, Singer LG, Husain S

Am J Transplant. 2018 Jan;18(1):113-124

A prospective multicentre study of healthcare provider preference in rapid HIV testing kits: Determine versus INSTI.

Amyai N, Darling K, D'Acremont V, Castro E, Ebert S, Diserens MM, Perdrix J, Fossati AH, Bodenmann P, Cavassini M

Int J STD AIDS. 2018 Jan;29(1):51-56

HIV-infected patients' beliefs about their chronic co-treatments in comparison with their combined antiretroviral therapy.

Kamal S, Bugnon O, Cavassini M, Schneider MP

HIV Med. 2018 Jan;19(1):49-58

Fluoroquinolone prophylaxis in haematological cancer patients with neutropenia: ECIL critical appraisal of previous guidelines.

Mikulska M, Averbuch D, Tissot F, Cordonnier C, Akova M, Calandra T, Ceppi M, Bruzzi P, Viscoli C, European Conference on Infections in Leukemia (ECIL).

J Infect. 2018 Jan;76(1):20-37

2017

Genetic and clinic predictors of new onset diabetes mellitus after transplantation.

Saigi-Morgui N, Quteineh L, Bochud PY, Crettol S, Kutalik Z, Mueller NJ, Binet I, Van Delden C, Steiger J, Mohacsi P, Dufour JF, Soccal PM, Pascual M, Eap CB, Swiss Transplant Cohort Study.

Pharmacogenomics J. 2017 Dec 27

Free and total plasma concentrations of elvitegravir/cobicistat during pregnancy and postpartum: a case report.

Marzolini C, Decosterd L, Winterfeld U, Tissot F, Francini K, Buclin T, Livio F

Br J Clin Pharmacol. 2017 Dec;83(12):2835-2838

Treating Clostridium difficile infection in patients presenting with hematological malignancies: Are current guidelines applicable?

Robin C, Héquette-Ruz R, Guery B, Boyle E, Herbaux C, Galperine T

Med Mal Infect. 2017 Dec;47(8):532-539

Cytomegalovirus infection management in solid organ transplant recipients across European centers in the time of molecular diagnostics: An ESGICH survey.

Navarro D, San-Juan R, Manuel O, Giménez E, Fernández-Ruiz M, Hirsch HH, Grossi PA, Aguado JM, ESGICH CMV Survey Study Group, on behalf of the European Study Group of Infections in Compromised Hosts (ESGICH) from the Society of Clinical Microbiology and I

Transpl Infect Dis. 2017 Dec;19(6)

Multidrug resistant (or antimicrobial-resistant) pathogens - alternatives to new antibiotics?

Brunel AS, Guery B

Swiss Med Wkly. 2017;147:w14553

Rivastigmine decreases brain damage in HIV patients with mild cognitive deficits.

Perrotta G, Bonnier G, Meskaldji DE, Romascano D, Aydarkhanov R, Daducci A, Simioni S, Cavassini M, Metral M, Lazeyras F, Meuli R, Krueger G, Du Pasquier RA, Granziera C

Ann Clin Transl Neurol. 2017 Dec;4(12):915-920

Low sensitivity of qSOFA, SIRS criteria and sepsis definition to identify infected patients at risk of complication in the prehospital setting and at the emergency department triage.

Tusgul S, Carron PN, Yersin B, Calandra T, Dami F

Scand J Trauma Resusc Emerg Med. 2017 Nov 3;25(1):108

Self-diagnosis of malaria by travellers: a cohort study on the use of malaria rapid diagnostic tests provided by a Swiss travel clinic.

Berthod D, Rochat J, Voumard R, Rochat L, Genton B, D'Acremont V

Malar J. 2017 Oct 28;16(1):436

Primary and Immortalized Human Respiratory Cells Display Different Patterns of Cytotoxicity and Cytokine Release upon Exposure to Deoxynivalenol, Nivalenol and Fusarenon-X.

Ferreira Lopes S, Vacher G, Ciarlo E, Savova-Bianchi D, Roger T, Niculita-Hirzel H

Toxins (Basel). 2017 Oct 25;9(11)

A novel electronic algorithm using host biomarker point-of-care tests for the management of febrile illnesses in Tanzanian children (e-POCT): A randomized, controlled non-inferiority trial.

Keitel K, Kagoro F, Samaka J, Masimba J, Said Z, Temba H, Mlaganile T, Sangu W, Rambaud-Althaus C, Gervaix A, Genton B, D'Acremont V

PLoS Med. 2017 Oct;14(10):e1002411

Susceptibility to Mycobacterium ulcerans Disease (Buruli ulcer) Is Associated with IFNG and iNOS Gene Polymorphisms.

Bibert S, Bratschi MW, Aboagye SY, Collinet E, Scherr N, Yeboah-Manu D, Beuret C, Pluschke G, Bochud PY

Front Microbiol. 2017;8:1903

Mining for pairs: shared clinic visit dates identify steady HIV-positive partnerships.

Marzel A, Shilaih M, Turk T, Campbell NK, Yang WL, Böni J, Yerly S, Klimkait T, Aubert V, Furrer H, Calmy A, Battegay M, Cavassini M, Bernasconi E, Schmid P, Metzner KJ, Günthard HF, Kouyos RD, Swiss HIV Cohort Study (SHCS).

HIV Med. 2017 Oct;18(9):667-676

BK Polyomavirus-Specific 9mer CD8 T Cell Responses Correlate With Clearance of BK Viremia in Kidney Transplant Recipients: First Report From the Swiss Transplant Cohort Study.

Leboeuf C, Wilk S, Achermann R, Binet I, Golshayan D, Hadaya K, Hirzel C, Hoffmann M, Huynh-Do U, Koller MT, Manuel O, Mueller NJ, Mueller TF, Schaub S, van Delden C, Weissbach FH, Hirsch HH, Swiss Transplant Cohort Study.

Am J Transplant. 2017 Oct;17(10):2591-2600

A systematic review and meta-analysis of HCV clearance.

Gauthiez E, Habfast-Robertson I, Rüeger S, Kutalik Z, Aubert V, Berg T, Cerny A, Gorgievski M, George J, Heim MH, Malinverni R, Moradpour D, Müllhaupt B, Negro F, Semela D, Semmo N, Villard J, Bibert S, Bochud PY, Swiss Hepatitis C Cohort Study.

Liver Int. 2017 Oct;37(10):1431-1445

Sex-specific effects of TLR9 promoter variants on spontaneous clearance of HCV infection.

Fischer J, Weber ANR, Böhm S, Dickhöfer S, El Maadidi S, Deichsel D, Knop V, Klinker H, Möller B, Rasenack J, Wang L, Sharma M, Hinrichsen H, Spengler U, Buggisch P, Sarrazin C, Pawlita M, Waterboer T, Wiese M, Probst-Müller E, Malinverni R, Bochud PY, Ga

Gut. 2017 Oct;66(10):1829-1837

Assessing the danger of self-sustained HIV epidemics in heterosexuals by population based phylogenetic cluster analysis.

Turk T, Bachmann N, Kadelka C, Böni J, Yerly S, Aubert V, Klimkait T, Battegay M, Bernasconi E, Calmy A, Cavassini M, Furrer H, Hoffmann M, Günthard HF, Kouyos RD, Swiss HIV Cohort Study., Aubert V, Battegay M, Bernasconi E, Böni J, Braun DL, Bucher HC, C

Elife. 2017 Sep 12;6

Malaria prevention strategies and recommendations, from chemoprophylaxis to stand-by emergency treatment: a 10-year prospective study in a Swiss Travel Clinic.

Boubaker R, Hérard Fossati A, Meige P, Mialet C, Ngarambe Buffat C, Rochat J, Souvannaraj-Blanchant M, Uwanyiligira M, Widmer F, Payot S, Rochat L, de Vallière S, D'Acremont V, Genton B

J Travel Med. 2017 Sep 1;24(5)

Standby emergency treatment of malaria in travellers (SBET): So Be Eager to Test ….

Genton B, D'Acremont V

J Travel Med. 2017 Sep 1;24(5)

Adequate plasma drug concentrations suggest that amoxicillin can be administered by continuous infusion using elastomeric pumps.

Arensdorff L, Boillat-Blanco N, Decosterd L, Buclin T, de Vallière S

J Antimicrob Chemother. 2017 Sep 1;72(9):2613-2615

Intensive care medicine research agenda on invasive fungal infection in critically ill patients.

Bassetti M, Garnacho-Montero J, Calandra T, Kullberg B, Dimopoulos G, Azoulay E, Chakrabarti A, Kett D, Leon C, Ostrosky-Zeichner L, Sanguinetti M, Timsit JF, Richardson MD, Shorr A, Cornely OA

Intensive Care Med. 2017 Sep;43(9):1225-1238

Ethnicity predicts viral rebound after travel to the tropics in HIV-infected travelers to the tropics in the Swiss HIV Cohort Study.

Gebreselassie HM, Kraus D, Fux CA, Haubitz S, Scherrer A, Hatz C, Veit O, Stoeckle M, Fehr J, de Lucia S, Cavassini M, Bernasconi E, Schmid P, Furrer H, Staehelin C, Swiss HIV Cohort Study (SHCS).

HIV Med. 2017 Sep;18(8):564-572

Fungicidal activity of copper-sputtered flexible surfaces under dark and actinic light against azole-resistant Candida albicans and Candida glabrata.

Ballo MKS, Rtimi S, Kiwi J, Pulgarin C, Entenza JM, Bizzini A

J Photochem Photobiol B. 2017 Sep;174:229-234

Sirtuin 2 Deficiency Increases Bacterial Phagocytosis by Macrophages and Protects from Chronic Staphylococcal Infection.

Ciarlo E, Heinonen T, Théroude C, Herderschee J, Mombelli M, Lugrin J, Pfefferlé M, Tyrrell B, Lensch S, Acha-Orbea H, Le Roy D, Auwerx J, Roger T

Front Immunol. 2017;8:1037

Impact of screening and antiretroviral therapy on anal cancer incidence in HIV-positive MSM.

Blaser N, Bertisch B, Kouyos RD, Calmy A, Bucher HC, Cavassini M, Estill J, Keiser O, Egger M, Swiss HIV Cohort Study.

AIDS. 2017 Aug 24;31(13):1859-1866

Clinical and laboratory predictors of death in African children with features of severe malaria: a systematic review and meta-analysis.

Sypniewska P, Duda JF, Locatelli I, Althaus CR, Althaus F, Genton B

BMC Med. 2017 Aug 3;15(1):147

High prevalence of physical inactivity among patients from the Swiss HIV Cohort Study.

Schäfer J, Young J, Calmy A, Nicca D, Hasse B, Brun Del Re C, Cavassini M, Bernasconi E, Schmidt-Trucksäss A, Bucher HC, Swiss HIV Cohort Study.

AIDS Care. 2017 Aug;29(8):1056-1061

Fidaxomicin for treatment of Clostridium difficile infection in clinical practice: a prospective cohort study in a French University Hospital.

Pichenot M, Héquette-Ruz R, Le Guern R, Grandbastien B, Charlet C, Wallet F, Schiettecatte S, Loeuillet F, Guery B, Galperine T

Infection. 2017 Aug;45(4):425-431

Patient satisfaction in an outpatient parenteral antimicrobial therapy (OPAT) unit practising predominantly self-administration of antibiotics with elastomeric pumps.

Saillen L, Arensdorff L, Moulin E, Voumard R, Cochet C, Boillat-Blanco N, Gardiol C, de Vallière S

Eur J Clin Microbiol Infect Dis. 2017 Aug;36(8):1387-1392

Patient and doctor perspectives on HIV screening in the emergency department: A prospective cross-sectional study.

De Rossi N, Dattner N, Cavassini M, Peters S, Hugli O, Darling KEA

PLoS One. 2017;12(7):e0180389

PIRATE project: point-of-care, informatics-based randomised controlled trial for decreasing overuse of antibiotic therapy in Gram-negative bacteraemia.

Huttner A, Albrich WC, Bochud PY, Gayet-Ageron A, Rossel A, Dach EV, Harbarth S, Kaiser L

BMJ Open. 2017 Jul 13;7(7):e017996

A Pseudomonas aeruginosa TIR effector mediates immune evasion by targeting UBAP1 and TLR adaptors.

Imbert PR, Louche A, Luizet JB, Grandjean T, Bigot S, Wood TE, Gagné S, Blanco A, Wunderley L, Terradot L, Woodman P, Garvis S, Filloux A, Guery B, Salcedo SP

EMBO J. 2017 Jul 3;36(13):1869-1887

Preventive Strategies Against Cytomegalovirus and Incidence of α-Herpesvirus Infections in Solid Organ Transplant Recipients: A Nationwide Cohort Study.

Martin-Gandul C, Stampf S, Héquet D, Mueller NJ, Cusini A, van Delden C, Khanna N, Boggian K, Hirzel C, Soccal P, Hirsch HH, Pascual M, Meylan P, Manuel O, Swiss Transplant Cohort Study (STCS).

Am J Transplant. 2017 Jul;17(7):1813-1822

Importance of whole genome sequencing for the assessment of outbreaks in diagnostic laboratories: analysis of a case series of invasive Streptococcus pyogenes infections.

Tagini F, Aubert B, Troillet N, Pillonel T, Praz G, Crisinel PA, Prod'hom G, Asner S, Greub G

Eur J Clin Microbiol Infect Dis. 2017 Jul;36(7):1173-1180

Sirtuin 3 deficiency does not alter host defenses against bacterial and fungal infections.

Ciarlo E, Heinonen T, Lugrin J, Acha-Orbea H, Le Roy D, Auwerx J, Roger T

Sci Rep. 2017 Jun 20;7(1):3853

The Anticancer Peptide TAT-RasGAP317-326 Exerts Broad Antimicrobial Activity.

Heulot M, Jacquier N, Aeby S, Le Roy D, Roger T, Trofimenko E, Barras D, Greub G, Widmann C

Front Microbiol. 2017;8:994

Catheter retention as a consequence rather than a cause of unfavorable outcome in candidemia.

Intensive Care Med. 2017 Jun;43(6):935-939

Changing Epidemiology of Invasive Mold Infections in Patients Receiving Azole Prophylaxis.

Lamoth F, Chung SJ, Damonti L, Alexander BD

Clin Infect Dis. 2017 Jun 1;64(11):1619-1621

Artemether-Lumefantrine Treatment Failure in Nonimmune European Travelers With Plasmodium falciparum Malaria: Do We Need to Reconsider Dosing in Patients From Nonendemic Regions?

Neumayr A, Paris DH, Genton B, Hatz C

Clin Infect Dis. 2017 May 15;64(10):1466-1467

A universal testing and treatment intervention to improve HIV control: One-year results from intervention communities in Zambia in the HPTN 071 (PopART) cluster-randomised trial.

Hayes R, Floyd S, Schaap A, Shanaube K, Bock P, Sabapathy K, Griffith S, Donnell D, Piwowar-Manning E, El-Sadr W, Beyers N, Ayles H, Fidler S, HPTN 071 (PopART) Study Team.

PLoS Med. 2017 May;14(5):e1002292

Predictive value of clinical and laboratory features for the main febrile diseases in children living in Tanzania: A prospective observational study.

De Santis O, Kilowoko M, Kyungu E, Sangu W, Cherpillod P, Kaiser L, Genton B, D'Acremont V

PLoS One. 2017;12(5):e0173314

First-trimester artemisinin derivatives and quinine treatments and the risk of adverse pregnancy outcomes in Africa and Asia: A meta-analysis of observational studies.

Dellicour S, Sevene E, McGready R, Tinto H, Mosha D, Manyando C, Rulisa S, Desai M, Ouma P, Oneko M, Vala A, Rupérez M, Macete E, Menéndez C, Nakanabo-Diallo S, Kazienga A, Valéa I, Calip G, Augusto O, Genton B, Njunju EM, Moore KA, d'Alessandro U, Nosten

PLoS Med. 2017 May;14(5):e1002290

Fecal Microbiota Transplantation: Do We Need Harmonization?

Galpérine T, Sokol H, Guery B

Clin Infect Dis. 2017 May 1;64(9):1292

The Presence of Human Immunodeficiency Virus-Associated Neurocognitive Disorders Is Associated With a Lower Adherence to Combined Antiretroviral Treatment.

Kamal S, Locatelli I, Wandeler G, Sehhat A, Bugnon O, Metral M, Du Pasquier R, Gutbrod K, Cavassini M, Schneider MP, and the Swiss HIV Cohort Study.

Open Forum Infect Dis. 2017 Spring;4(2):ofx070

Impact of CD4 and CD8 dynamics and viral rebounds on loss of virological control in HIV controllers.

Chereau F, Madec Y, Sabin C, Obel N, Ruiz-Mateos E, Chrysos G, Fidler S, Lehmann C, Zangerle R, Wittkop L, Reiss P, Hamouda O, Estrada Perez V, Leal M, Mocroft A, Garcia De Olalla P, Ammassari A, D'Arminio Monforte A, Mussini C, Segura F, Castagna A, Cava

PLoS One. 2017;12(4):e0173893

Comparative analysis of viral shedding in pediatric and adult subjects with central nervous system-associated enterovirus infections from 2013 to 2015 in Switzerland.

Cordey S, Schibler M, L'Huillier AG, Wagner N, Gonçalves AR, Ambrosioni J, Asner S, Turin L, Posfay-Barbe KM, Kaiser L

J Clin Virol. 2017 Apr;89:22-29

ECIL-6 guidelines for the treatment of invasive candidiasis, aspergillosis and mucormycosis in leukemia and hematopoietic stem cell transplant patients.

Tissot F, Agrawal S, Pagano L, Petrikkos G, Groll AH, Skiada A, Lass-Flörl C, Calandra T, Viscoli C, Herbrecht R

Haematologica. 2017 Mar;102(3):433-444

Early diagnosis of invasive mould infections and disease.

Lamoth F, Calandra T

J Antimicrob Chemother. 2017 Mar 1;72(suppl_1):i19-i28

Proposal for shorter antibiotic therapies.

Wintenberger C, Guery B, Bonnet E, Castan B, Cohen R, Diamantis S, Lesprit P, Maulin L, Péan Y, Peju E, Piroth L, Stahl JP, Strady C, Varon E, Vuotto F, Gauzit R, Recommendation Group of the SPILF.

Med Mal Infect. 2017 Mar;47(2):92-141

Genomic analysis of ST88 community-acquired methicillin resistant Staphylococcus aureus in Ghana.

Kpeli G, Buultjens AH, Giulieri S, Owusu-Mireku E, Aboagye SY, Baines SL, Seemann T, Bulach D, Gonçalves da Silva A, Monk IR, Howden BP, Pluschke G, Yeboah-Manu D, Stinear T

PeerJ. 2017;5:e3047

Human MicroRNA Responses Predict Cytomegalovirus Replication Following Solid Organ Transplantation.

Han SH, Kumar D, Ferreira VH, Egli A, Hirsch HH, Weisser M, Garzoni C, van Delden C, Bochud PY, Manuel O, Meylan P, Boggian K, Husain S, Mueller NJ, Humar A, Swiss Transplant Cohort Study.

J Infect Dis. 2017 Feb 15;215(4):537-546

Hepatitis C Infection and the Risk of Non-Liver-Related Morbidity and Mortality in HIV-Infected Persons in the Swiss HIV Cohort Study.

Kovari H, Rauch A, Kouyos R, Rougemont M, Cavassini M, Schmid P, Stöckle M, Bernasconi E, Weber R, Ledergerber B, Swiss HIV Cohort Study.

Clin Infect Dis. 2017 Feb 15;64(4):490-497

Role of TLR1, TLR2 and TLR6 in the modulation of intestinal inflammation and Candida albicans elimination.

Choteau L, Vancraeyneste H, Le Roy D, Dubuquoy L, Romani L, Jouault T, Poulain D, Sendid B, Calandra T, Roger T, Jawhara S

Gut Pathog. 2017;9:9

Life expectancy in HIV-positive persons in Switzerland: matched comparison with general population.

Gueler A, Moser A, Calmy A, Günthard HF, Bernasconi E, Furrer H, Fux CA, Battegay M, Cavassini M, Vernazza P, Zwahlen M, Egger M, Swiss HIV Cohort Study, Swiss National Cohort.

AIDS. 2017 Jan 28;31(3):427-436

Plasma Levels of Macrophage Migration Inhibitory Factor and d-Dopachrome Tautomerase Show a Highly Specific Profile in Early Life.

Roger T, Schlapbach LJ, Schneider A, Weier M, Wellmann S, Marquis P, Vermijlen D, Sweep FC, Leng L, Bucala R, Calandra T, Giannoni E

Front Immunol. 2017;8:26

The aliphatic amidase AmiE is involved in regulation of Pseudomonas aeruginosa virulence.

Clamens T, Rosay T, Crépin A, Grandjean T, Kentache T, Hardouin J, Bortolotti P, Neidig A, Mooij M, Hillion M, Vieillard J, Cosette P, Overhage J, O'Gara F, Bouffartigues E, Dufour A, Chevalier S, Guery B, Cornelis P, Feuilloley MG, Lesouhaitier O

Sci Rep. 2017 Jan 24;7:41178

Cost-Effectiveness Analysis of Five Competing Strategies for the Management of Multiple Recurrent Community-Onset Clostridium difficile Infection in France.

Baro E, Galperine T, Denies F, Lannoy D, Lenne X, Odou P, Guery B, Dervaux B

PLoS One. 2017;12(1):e0170258

Rapid adaptation drives invasion of airway donor microbiota by Pseudomonas after lung transplantation.

Beaume M, Köhler T, Greub G, Manuel O, Aubert JD, Baerlocher L, Farinelli L, Buckling A, van Delden C, Swiss Transplant Cohort Study.

Sci Rep. 2017 Jan 17;7:40309

Performance of Health Workers Using an Electronic Algorithm for the Management of Childhood Illness in Tanzania: A Pilot Implementation Study.

Rambaud-Althaus C, Shao A, Samaka J, Swai N, Perri S, Kahama-Maro J, Mitchell M, D'Acremont V, Genton B

Am J Trop Med Hyg. 2017 Jan 11;96(1):249-257

Sentinel surveillance of imported dengue via travellers to Europe 2012 to 2014: TropNet data from the DengueTools Research Initiative.

Neumayr A, Muñoz J, Schunk M, Bottieau E, Cramer J, Calleri G, López-Vélez R, Angheben A, Zoller T, Visser L, Serre-Delcor N, Genton B, Castelli F, Van Esbroeck M, Matteelli A, Rochat L, Sulleiro E, Kurth F, Gobbi F, Norman F, Torta I, Clerinx J, Poluda D

Euro Surveill. 2017 Jan 5;22(1)

No Evidence for Association of β-Defensin Genomic Copy Number with HIV Susceptibility, HIV Load during Clinical Latency, or Progression to AIDS.

Abujaber R, Shea PR, McLaren PJ, Lakhi S, Gilmour J, Allen S, Fellay J, Hollox EJ, IAVI Africa HIV Prevention Partnership, Swiss HIV Cohort Study.

Ann Hum Genet. 2017 Jan;81(1):27-34

Factors associated with syphilis incidence in the HIV-infected in the era of highly active antiretrovirals.

Shilaih M, Marzel A, Braun DL, Scherrer AU, Kovari H, Young J, Calmy A, Darling K, Battegay M, Hoffmann M, Bernasconi E, Thurnheer MC, Günthard HF, Kouyos RD, and the Swiss HIV Cohort Study.

Medicine (Baltimore). 2017 Jan;96(2):e5849

Ultrasonography : an useful diagnostic tool for the general practitioner.

Rikley E, Boillat-Blanco N, Meuwly JY, Breuss É, Senn N

Rev Med Suisse. 2017 Mai 10;13(562):990-994

2016

Population Pharmacokinetics and Pharmacogenetics Analysis of Rilpivirine in HIV-1-Infected Individuals.

Aouri M, Barcelo C, Guidi M, Rotger M, Cavassini M, Hizrel C, Buclin T, Decosterd LA, Csajka C, Swiss HIV Cohort Study.

Antimicrob Agents Chemother. 2017 Jan;61(1)

Frequent Occupational Exposure to Fusarium Mycotoxins of Workers in the Swiss Grain Industry.

Niculita-Hirzel H, Hantier G, Storti F, Plateel G, Roger T

Toxins (Basel). 2016 Dec 12;8(12)

Community-Based Surveillance to Monitor Mortality in a Malaria-Endemic and Ebola-Epidemic Setting in Rural Guinea.

Tiffany A, Moundekeno FP, Traoré A, Haile M, Sterk E, Guilavogui T, Serafini M, Genton B, Grais RF

Am J Trop Med Hyg. 2016 Dec 7;95(6):1389-1397

Update of the Swiss guidelines on post-treatment Lyme disease syndrome.

Nemeth J, Bernasconi E, Heininger U, Abbas M, Nadal D, Strahm C, Erb S, Zimmerli S, Furrer H, Delaloye J, Kuntzer T, Altpeter E, Sturzenegger M, Weber R, For The Swiss Society For Infectious Diseases And The Swiss Society For Neurology

Swiss Med Wkly. 2016;146:w14353

Increased Nasopharyngeal Density and Concurrent Carriage of Streptococcus pneumoniae, Haemophilus influenzae, and Moraxella catarrhalis Are Associated with Pneumonia in Febrile Children.

Chochua S, D'Acremont V, Hanke C, Alfa D, Shak J, Kilowoko M, Kyungu E, Kaiser L, Genton B, Klugman KP, Vidal JE

PLoS One. 2016;11(12):e0167725

[Macrophage migration inhibitory factor (MIF), a regulator of neonatal innate immune response].

Giannoni É, Schneider A, Calandra T, Roger T

Med Sci (Paris). 2016 Dec;32(12):1062-1064

Hepatitis C virus transmission among human immunodeficiency virus-infected men who have sex with men: Modeling the effect of behavioral and treatment interventions.

Salazar-Vizcaya L, Kouyos RD, Zahnd C, Wandeler G, Battegay M, Darling KE, Bernasconi E, Calmy A, Vernazza P, Furrer H, Egger M, Keiser O, Rauch A, Swiss HIV Cohort Study.

Hepatology. 2016 Dec;64(6):1856-1869

Impact of the microbial derived short chain fatty acid propionate on host susceptibility to bacterial and fungal infections in vivo.

Ciarlo E, Heinonen T, Herderschee J, Fenwick C, Mombelli M, Le Roy D, Roger T

Sci Rep. 2016 Nov 29;6:37944

Bacillus cereus bacteraemia: comparison between haematologic and nonhaematologic patients.

Tusgul S, Prod'hom G, Senn L, Meuli R, Bochud PY, Giulieri SG

New Microbes New Infect. 2017 Jan;15:65-71

Risk stratification and immunogenetic risk for infections following stem cell transplantation.

Wójtowicz A, Bochud PY

Virulence. 2016 Nov 16;7(8):917-929

Microbial Communities of Conducting and Respiratory Zones of Lung-Transplanted Patients.

Beaume M, Lazarevic V, Köhler T, Gaïa N, Manuel O, Aubert JD, Baerlocher L, Farinelli L, Gasche P, Schrenzel J, van Delden C, Swiss Transplant Cohort Study.

Front Microbiol. 2016;7:1749

Association between tuberculosis, diabetes and 25 hydroxyvitamin D in Tanzania: a longitudinal case control study.

Boillat-Blanco N, Bovet P, Ramaiya KL, Mganga M, Minja LT, Saleh L, Imboden M, Schindler C, Gagneux S, Daubenberger C, Reither K, Probst-Hensch N

BMC Infect Dis. 2016 Nov 3;16(1):626

Determinants of HIV-1 broadly neutralizing antibody induction.

Rusert P, Kouyos RD, Kadelka C, Ebner H, Schanz M, Huber M, Braun DL, Hozé N, Scherrer A, Magnus C, Weber J, Uhr T, Cippa V, Thorball CW, Kuster H, Cavassini M, Bernasconi E, Hoffmann M, Calmy A, Battegay M, Rauch A, Yerly S, Aubert V, Klimkait T, Böni J,

Nat Med. 2016 Nov;22(11):1260-1267

A new 3p25 locus is associated with liver fibrosis progression in human immunodeficiency virus/hepatitis C virus-coinfected patients.

Ulveling D, Le Clerc S, Cobat A, Labib T, Noirel J, Laville V, Coulonges C, Carpentier W, Nalpas B, Heim MH, Poynard T, Cerny A, Pol S, Bochud PY, Dabis F, Theodorou I, Lévy Y, Salmon D, Abel L, Dominguez S, Zagury JF, HEPAVIH ANRS CO13 Cohort Study Group

Hepatology. 2016 Nov;64(5):1462-1472

Clinical Presentation and Determinants of Mortality of Invasive Pulmonary Aspergillosis in Kidney Transplant Recipients: A Multinational Cohort Study.

Am J Transplant. 2016 Nov;16(11):3220-3234

Use of bacterial whole-genome sequencing to understand and improve the management of invasive Staphylococcus aureus infections.

Giulieri SG, Holmes NE, Stinear TP, Howden BP

Expert Rev Anti Infect Ther. 2016 Nov;14(11):1023-1036

Study of Early Elevated Gas6 Plasma Level as a Predictor of Mortality in a Prospective Cohort of Patients with Sepsis.

Stalder G, Que YA, Calzavarini S, Burnier L, Kosinski C, Ballabeni P, Roger T, Calandra T, Duchosal MA, Liaudet L, Eggimann P, Angelillo-Scherrer A

PLoS One. 2016;11(10):e0163542

DNA damage-associated biomarkers in studying individual sensitivity to low-dose radiation from cardiovascular imaging.

Lee WH, Nguyen PK, Fleischmann D, Wu JC

Eur Heart J. 2016 Oct 21;37(40):3075-3080

Harness shared data in international Zika registry.

Baud D, Gérardin P, Merriam A, Alves MP, Musso D, Genton B, Panchaud A

BMJ. 2016 Oct 5;355:i5319

Investigating Barriers in HIV-Testing Oncology Patients: The IBITOP Study, Phase I.

Merz L, Zimmermann S, Peters S, Cavassini M, Darling KE

Oncologist. 2016 Oct;21(10):1176-1182

Development of an algorithm for analysing the electronic measurement of medication adherence in routine HIV care.

Rotzinger A, Cavassini M, Bugnon O, Schneider MP

Int J Clin Pharm. 2016 Oct;38(5):1210-8

Visceral leishmaniasis in a lung transplant recipient: usefulness of highly sensitive real-time polymerase chain reaction for preemptive diagnosis.

Opota O, Balmpouzis Z, Berutto C, Kaiser-Guignard J, Greub G, Aubert JD, Prod'hom G, Manuel O, Jaton K

Transpl Infect Dis. 2016 Oct;18(5):801-804

Liver fibrosis in treatment-naïve HIV-infected and HIV/HBV co-infected patients: Zambia and Switzerland compared.

Wandeler G, Mulenga L, Vinikoor MJ, Kovari H, Battegay M, Calmy A, Cavassini M, Bernasconi E, Schmid P, Bolton-Moore C, Sinkala E, Chi BH, Egger M, Rauch A, for IeDEA-Southern Africa and the Swiss HIV Cohort Study.

Int J Infect Dis. 2016 Oct;51:97-102

Host - hepatitis C viral interactions: The role of genetics.

Heim MH, Bochud PY, George J

J Hepatol. 2016 Oct;65(1 Suppl):S22-S32

Host response to fungal infections - how immunology and host genetics could help to identify and treat patients at risk.

Khanna N, Stuehler C, Lünemann A, Wójtowicz A, Bochud PY, Leibundgut-Landmann S

Swiss Med Wkly. 2016;146:w14350

Trends in Incidences and Risk Factors for Hepatocellular Carcinoma and Other Liver Events in HIV and Hepatitis C Virus-coinfected Individuals From 2001 to 2014: A Multicohort Study.

Gjærde LI, Shepherd L, Jablonowska E, Lazzarin A, Rougemont M, Darling K, Battegay M, Braun D, Martel-Laferriere V, Lundgren JD, Rockstroh JK, Gill J, Rauch A, Mocroft A, Klein MB, Peters L

Clin Infect Dis. 2016 Sep 15;63(6):821-829

Novel strategies for targeting innate immune responses to influenza.

Shirey KA, Lai W, Patel MC, Pletneva LM, Pang C, Kurt-Jones E, Lipsky M, Roger T, Calandra T, Tracey KJ, Al-Abed Y, Bowie AG, Fasano A, Dinarello CA, Gusovsky F, Blanco JC, Vogel SN

Mucosal Immunol. 2016 Sep;9(5):1173-82

Oral valganciclovir for CMV gastritis.

Saouli AC, Salvade I, Saldarriaga J, Manuel O, Venetz JP, Golshayan D, Sempoux C, Pascual M

Clin Res Hepatol Gastroenterol. 2016 Sep;40(4):e50-1

New genotyping method discovers sustained nosocomial Pseudomonas aeruginosa outbreak in an intensive care burn unit.

Tissot F, Blanc DS, Basset P, Zanetti G, Berger MM, Que YA, Eggimann P, Senn L

J Hosp Infect. 2016 Sep;94(1):2-7

In Vitro and In Vivo Effectiveness of an Innovative Silver-Copper Nanoparticle Coating of Catheters To Prevent Methicillin-Resistant Staphylococcus aureus Infection.

Ballo MK, Rtimi S, Pulgarin C, Hopf N, Berthet A, Kiwi J, Moreillon P, Entenza JM, Bizzini A

Antimicrob Agents Chemother. 2016 Sep;60(9):5349-56

Late presentation to HIV care despite good access to health services: current epidemiological trends and how to do better.

Darling KE, Hachfeld A, Cavassini M, Kirk O, Furrer H, Wandeler G

Swiss Med Wkly. 2016;146:w14348

Cause-Specific Mortality in HIV-Positive Patients Who Survived Ten Years after Starting Antiretroviral Therapy.

Trickey A, May MT, Vehreschild J, Obel N, Gill MJ, Crane H, Boesecke C, Samji H, Grabar S, Cazanave C, Cavassini M, Shepherd L, d'Arminio Monforte A, Smit C, Saag M, Lampe F, Hernando V, Montero M, Zangerle R, Justice AC, Sterling T, Miro J, Ingle S, Ster

PLoS One. 2016;11(8):e0160460

Dually Active HIV/HBV Antiretrovirals as Protection Against Incident Hepatitis B Infections: Potential for Prophylaxis.

Shilaih M, Marzel A, Scherrer AU, Braun DL, Kovari H, Rougemont M, Darling K, Battegay M, Hoffmann M, Bernasconi E, Hirzel C, Günthard HF, Kouyos RD, Swiss HIV Cohort Study a., Swiss HIV Cohort Study.

J Infect Dis. 2016 Aug 15;214(4):599-606

Nocardia Infection in Solid Organ Transplant Recipients: A Multicenter European Case-control Study.

Coussement J, Lebeaux D, van Delden C, Guillot H, Freund R, Marbus S, Melica G, Van Wijngaerden E, Douvry B, Van Laecke S, Vuotto F, Tricot L, Fernández-Ruiz M, Dantal J, Hirzel C, Jais JP, Rodriguez-Nava V, Lortholary O, Jacobs F, European Study Group fo

Clin Infect Dis. 2016 Aug 1;63(3):338-45

Successful Prevention of Transmission of Integrase Resistance in the Swiss HIV Cohort Study.

Scherrer AU, Yang WL, Kouyos RD, Böni J, Yerly S, Klimkait T, Aubert V, Cavassini M, Battegay M, Hauser C, Calmy A, Schmid P, Bernasconi E, Günthard HF, Swiss HIV Cohort Study.

J Infect Dis. 2016 Aug 1;214(3):399-402

Association of disclosure of HIV status with medication adherence.

Rotzinger A, Locatelli I, Reymermier M, Amico S, Bugnon O, Cavassini M, Schneider MP

Patient Educ Couns. 2016 Aug;99(8):1413-20

Privacy-preserving genomic testing in the clinic: a model using HIV treatment.

McLaren PJ, Raisaro JL, Aouri M, Rotger M, Ayday E, Bartha I, Delgado MB, Vallet Y, Günthard HF, Cavassini M, Furrer H, Doco-Lecompte T, Marzolini C, Schmid P, Di Benedetto C, Decosterd LA, Fellay J, Hubaux JP, Telenti A

Genet Med. 2016 Aug;18(8):814-22

Possible healthcare-associated transmission as a cause of secondary infection and population structure of Staphylococcus aureus isolates from two wound treatment centres in Ghana.

Kpeli G, Darko Otchere I, Lamelas A, Buultjens AL, Bulach D, Baines SL, Seemann T, Giulieri S, Nakobu Z, Aboagye SY, Owusu-Mireku E, Pluschke G, Stinear TP, Yeboah-Manu D

New Microbes New Infect. 2016 Sep;13:92-101

Ventricular assist devices as bridge to heart transplantation: impact on post-transplant infections.

Héquet D, Kralidis G, Carrel T, Cusini A, Garzoni C, Hullin R, Meylan PR, Mohacsi P, Mueller NJ, Ruschitzka F, Tozzi P, van Delden C, Weisser M, Wilhelm MJ, Pascual M, Manuel O, Swiss Transplant Cohort Study (STCS).

BMC Infect Dis. 2016 Jul 8;16:321

Astrovirus VA1 identified by next-generation sequencing in a nasopharyngeal specimen of a febrile Tanzanian child with acute respiratory disease of unknown etiology.

Cordey S, Brito F, Vu DL, Turin L, Kilowoko M, Kyungu E, Genton B, Zdobnov EM, D'Acremont V, Kaiser L

Emerg Microbes Infect. 2016 Jul 6;5:e67

Population pharmacokinetic analysis of elvitegravir and cobicistat in HIV-1-infected individuals.

Barceló C, Gaspar F, Aouri M, Panchaud A, Rotger M, Guidi M, Cavassini M, Buclin T, Decosterd LA, Csajka C, Swiss HIV Cohort Study.

J Antimicrob Chemother. 2016 Jul;71(7):1933-42

Risk Factors Associated With Early Invasive Pulmonary Aspergillosis in Kidney Transplant Recipients: Results From a Multinational Matched Case-Control Study.

López-Medrano F, Silva JT, Fernández-Ruiz M, Carver PL, van Delden C, Merino E, Pérez-Saez MJ, Montero M, Coussement J, de Abreu Mazzolin M, Cervera C, Santos L, Sabé N, Scemla A, Cordero E, Cruzado-Vega L, Martín-Moreno PL, Len Ó, Rudas E, de León AP, Ar

Am J Transplant. 2016 Jul;16(7):2148-57

Added value of molecular assay Xpert MTB/RIF compared to sputum smear microscopy to assess the risk of tuberculosis transmission in a low-prevalence country.

Opota O, Senn L, Prod'hom G, Mazza-Stalder J, Tissot F, Greub G, Jaton K

Clin Microbiol Infect. 2016 Jul;22(7):613-9

Management of infections in critically ill returning travellers in the intensive care unit-II: clinical syndromes and special considerations in immunocompromised patients.

Rello J, Manuel O, Eggimann P, Richards G, Wejse C, Petersen JE, Zacharowski K, Leblebicioglu H, ESGCIP and ESGITM.

Int J Infect Dis. 2016 Jul;48:104-12

PD-1(+) and follicular helper T cells are responsible for persistent HIV-1 transcription in treated aviremic individuals.

Banga R, Procopio FA, Noto A, Pollakis G, Cavassini M, Ohmiti K, Corpataux JM, de Leval L, Pantaleo G, Perreau M

Nat Med. 2016 Jul;22(7):754-61

Bactericidal activity and mechanism of action of copper-sputtered flexible surfaces against multidrug-resistant pathogens.

Ballo MK, Rtimi S, Mancini S, Kiwi J, Pulgarin C, Entenza JM, Bizzini A

Appl Microbiol Biotechnol. 2016 Jul;100(13):5945-53

Humoral, T-cell and B-cell immune responses to seasonal influenza vaccine in solid organ transplant recipients receiving anti-T cell therapies.

Héquet D, Pascual M, Lartey S, Pathirana RD, Bredholt G, Hoschler K, Hullin R, Meylan P, Cox RJ, Manuel O

Vaccine. 2016 Jun 30;34(31):3576-83

Innate immune defects in HIV permissive cell lines.

Rausell A, Muñoz M, Martinez R, Roger T, Telenti A, Ciuffi A

Retrovirology. 2016 Jun 27;13(1):43

Mortality According to CD4 Count at Start of Combination Antiretroviral Therapy Among HIV-infected Patients Followed for up to 15 Years After Start of Treatment: Collaborative Cohort Study.

May MT, Vehreschild JJ, Trickey A, Obel N, Reiss P, Bonnet F, Mary-Krause M, Samji H, Cavassini M, Gill MJ, Shepherd LC, Crane HM, d'Arminio Monforte A, Burkholder GA, Johnson MM, Sobrino-Vegas P, Domingo P, Zangerle R, Justice AC, Sterling TR, Miró JM, S

Clin Infect Dis. 2016 Jun 15;62(12):1571-1577

Genotypic Resistance Tests Sequences Reveal the Role of Marginalized Populations in HIV-1 Transmission in Switzerland.

Shilaih M, Marzel A, Yang WL, Scherrer AU, Schüpbach J, Böni J, Yerly S, Hirsch HH, Aubert V, Cavassini M, Klimkait T, Vernazza PL, Bernasconi E, Furrer H, Günthard HF, Kouyos R, Swiss HIV Cohort Study.

Sci Rep. 2016 Jun 14;6:27580

Colonization With Vancomycin-Resistant Enterococci After Discharge From an Epidemic Ward: Results of Outpatient Contact Screening by Visiting Nurses.

Voide C, Petignat C, Blanc DS, Zanetti G, Genoud P, Wasserfallen JB, Senn L

Infect Control Hosp Epidemiol. 2016 Jun;37(6):731-2

Role of Antifungal Susceptibility Testing in Non-Aspergillus Invasive Mold Infections.

Lamoth F, Damonti L, Alexander BD

J Clin Microbiol. 2016 Jun;54(6):1638-1640

Encouraging impact following 2.5 years of reinforced malaria control interventions in a hyperendemic region of the Republic of Guinea.

Tiffany A, Moundekeno FP, Traoré A, Haile M, Sterk E, Guilavogui T, Genton B, Serafini M, Grais RF

Malar J. 2016 May 28;15(1):298

Diagnosis and management of invasive candidiasis in the ICU: an updated approach to an old enemy.

Calandra T, Roberts JA, Antonelli M, Bassetti M, Vincent JL

Crit Care. 2016 May 27;20(1):125

Advances in antibiotic therapy in the critically ill.

Vincent JL, Bassetti M, François B, Karam G, Chastre J, Torres A, Roberts JA, Taccone FS, Rello J, Calandra T, De Backer D, Welte T, Antonelli M

Crit Care. 2016 May 17;20(1):133

Aspergillus fumigatus-Related Species in Clinical Practice.

Lamoth F

Front Microbiol. 2016;7:683

Emergence of Acquired HIV-1 Drug Resistance Almost Stopped in Switzerland: A 15-Year Prospective Cohort Analysis.

Scherrer AU, von Wyl V, Yang WL, Kouyos RD, Böni J, Yerly S, Klimkait T, Aubert V, Cavassini M, Battegay M, Furrer H, Calmy A, Vernazza P, Bernasconi E, Günthard HF, Swiss HIV Cohort Study., Aubert V, Battegay M, Bernasconi E, Böni J, Braun DL, Bucher HC,

Clin Infect Dis. 2016 May 15;62(10):1310-1317

[New approaches of malaria prevention for travelers].

Voumard R, Berthod D, Rochat L, D'Acremont V, Genton B, De Vallière S

Rev Med Suisse. 2016 May 4;12(517):885-8

[Emerging arboviruses].

Schaller A, Moulin E, Cherpillod P, Kaiser L, De Vallière S, Boillat-Blanco N

Rev Med Suisse. 2016 May 4;12(517):889-94

Setting up an outpatient parenteral antimicrobial therapy (OPAT) unit in Switzerland: review of the first 18 months of activity.

Gardiol C, Voumard R, Cochet C, de Vallière S

Eur J Clin Microbiol Infect Dis. 2016 May;35(5):839-45

[European migrant crisis and reemergence of infections in Switzerland].

Jaton L, Kritikos A, Bodenmann P, Greub G, Merz L

Rev Med Suisse. 2016 Apr 13;12(514):749-53

[Outpatient parenteral antibiotic therapy (OPAT): the Lausanne experience supporting new perspectives].

Moulin E, Boillata N, De Vallière S

Rev Med Suisse. 2016 Apr 13;12(514):726-30

[Antimicrobial stewardship in primary care setting].

Mombelli M, Plüss-Suard C, Niquille A, Zanetti G, Boillat-Blanco N

Rev Med Suisse. 2016 Apr 13;12(514):744-8

Bloodstream infections after solid-organ transplantation.

Kritikos A, Manuel O

Virulence. 2016 Apr 2;7(3):329-40

Polymicrobial vertebral osteomyelitis after oesophageal biopsy: a case report.

Giger A, Yusuf E, Manuel O, Clerc O, Trampuz A

BMC Infect Dis. 2016 Mar 31;16:141

Functional polymorphisms of macrophage migration inhibitory factor as predictors of morbidity and mortality of pneumococcal meningitis.

Savva A, Brouwer MC, Roger T, Valls Serón M, Le Roy D, Ferwerda B, van der Ende A, Bochud PY, van de Beek D, Calandra T

Proc Natl Acad Sci U S A. 2016 Mar 29;113(13):3597-602

Mouse Model of Respiratory Tract Infection Induced by Waddlia chondrophila.

Pilloux L, LeRoy D, Brunel C, Roger T, Greub G

PLoS One. 2016;11(3):e0150909

A retrospective study of deep sternal wound infections: clinical and microbiological characteristics, treatment, and risk factors for complications.

Chan M, Yusuf E, Giulieri S, Perrottet N, Von Segesser L, Borens O, Trampuz A

Diagn Microbiol Infect Dis. 2016 Mar;84(3):261-5

Travel-related health risks in moderately and severely immunocompromised patients: a case-control study.

Dekkiche S, de Vallière S, D'Acremont V, Genton B

J Travel Med. 2016 Mar;23(3)

High expression levels of macrophage migration inhibitory factor sustain the innate immune responses of neonates.

Roger T, Schneider A, Weier M, Sweep FC, Le Roy D, Bernhagen J, Calandra T, Giannoni E

Proc Natl Acad Sci U S A. 2016 Feb 23;113(8):E997-1005

Simultaneous outbreaks of dengue, chikungunya and Zika virus infections: diagnosis challenge in a returning traveller with nonspecific febrile illness.

Moulin E, Selby K, Cherpillod P, Kaiser L, Boillat-Blanco N

New Microbes New Infect. 2016 May;11:6-7

Editorial: Advances in Aspergillus fumigatus Pathobiology.

Lamoth F, Juvvadi PR, Steinbach WJ

Front Microbiol. 2016;7:43

Ability to Work and Employment Rates in Human Immunodeficiency Virus (HIV)-1-Infected Individuals Receiving Combination Antiretroviral Therapy: The Swiss HIV Cohort Study.

Elzi L, Conen A, Patzen A, Fehr J, Cavassini M, Calmy A, Schmid P, Bernasconi E, Furrer H, Battegay M

Open Forum Infect Dis. 2016 Jan;3(1):ofw022

Presence of Chlamydiales DNA in samples negative by broad-range bacterial 16S rRNA PCRs: new insights into chlamydial pathogenic role.

Tagini F, Jaton K, Manuel O, Greub G

New Microbes New Infect. 2016 May;11:32-3

Travellers' profile, travel patterns and vaccine practices--a 10-year prospective study in a Swiss Travel Clinic.

Boubaker R, Meige P, Mialet C, Buffat CN, Uwanyiligira M, Widmer F, Rochat J, Fossati AH, Souvannaraj-Blanchant M, Payot S, Rochat L, de Vallière S, Genton B, D'Acremont V

J Travel Med. 2016 Jan;23(1)

Screening the Impact of Sirtuin Inhibitors on Inflammatory and Innate Immune Responses of Macrophages and in a Mouse Model of Endotoxic Shock.

Ciarlo E, Roger T

Methods Mol Biol. 2016;1436:313-34

Diagnosis of Aerococcus urinae infections: Importance of matrix-assisted laser desorption ionization time-of-flight mass spectrometry and broad-range 16S rDNA PCR.

Opota O, Prod'hom G, Andreutti-Zaugg C, Dessauges M, Merz L, Greub G, Chave JP, Jaton K

Clin Microbiol Infect. 2016 Jan;22(1):e1-e2

Hepatitis C Virus Awareness Among Men Who Have Sex With Men in Southwest Switzerland.

Clerc O, Darling K, Calmy A, Dubois-Arber F, Cavassini M

Sex Transm Dis. 2016 Jan;43(1):44-8

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Dernière mise à jour le 31/05/2018 à 19:52