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Publications

2023

Core genome multilocus sequence typing of Clostridioides difficile to investigate transmission in the hospital setting.

Filippidis P, Senn L, Poncet F, Grandbastien B, Prod'hom G, Greub G, Guery B, Blanc DS

Eur J Clin Microbiol Infect Dis. 2023 Dec;42(12):1469-1476

Occurrence of Aspergillus fumigatus azole resistance in soils from Switzerland.

Schürch S, Gindro K, Schnee S, Dubuis PH, Codina JM, Wilhelm M, Riat A, Lamoth F, Sanglard D

Med Mycol. 2023 Nov 1

Diversity and evolution of an abundant ICEclc family of integrative and conjugative elements in Pseudomonas aeruginosa.

Benigno V, Carraro N, Sarton-Lohéac G, Romano-Bertrand S, Blanc DS, van der Meer JR

mSphere. 2023 Oct 30:e0051723

[HIV self-tests in community pharmacies Inventory and practice recommendations for interprofessional collaborations].

Rousseau M, Solh Dost S, Santos B, Gauthier R, Cavassini M, Calmy A, Schneider M

Rev Med Suisse. 2023 Oct 25;19(847):2017-2020

Re: 'The effect of antibiotic therapy for Clostridioides difficile infection on mortality and other patient-relevant outcomes' by Stabholz et al.

van Prehn J, Skinner AM, Krutova M, Guery B

Clin Microbiol Infect. 2023 Oct 20

Lymph node dendritic cells harbor inducible replication-competent HIV despite years of suppressive ART.

Banga R, Procopio FA, Lana E, Gladkov GT, Roseto I, Parsons EM, Lian X, Armani-Tourret M, Bellefroid M, Gao C, Kauzlaric A, Foglierini M, Alfageme-Abello O, Sluka SHM, Munoz O, Mastrangelo A, Fenwick C, Muller Y, Mkindi CG, Daubenberger C, Cavassini M, Tr

Cell Host Microbe. 2023 Oct 11;31(10):1714-1731.e9

Long-term quantitative hepatitis B surface antigen (HBsAg) trajectories in persons with and without HBsAg loss on tenofovir-containing antiretroviral therapy.

Begré L, Boyd A, Salazar-Vizcaya L, Suter-Riniker F, Béguelin C, Rockstroh JK, Günthard HF, Calmy A, Cavassini M, Stöckle M, Schmid P, Bernasconi E, Levrero M, Zoulim F, Wandeler G, Rauch A, Swiss HIV Cohort Study (SHCS)

HIV Med. 2023 Oct 10

Infections after chimeric antigen receptor (CAR)-T-cell therapy for hematologic malignancies.

Kampouri E, Little JS, Rejeski K, Manuel O, Hammond SP, Hill JA

Transpl Infect Dis. 2023 Oct 3:e14157

Impact of COVID-19 on long-term lung function in lung transplant recipients: A single-center retrospective cohort study.

Touilloux B, Papadimitriou-Olivgeris M, Bongard C, Mansouri N, Ioakeim F, Manuel O, Koutsokera A, Aubert JD, Casutt A

Transpl Infect Dis. 2023 Oct;25(5):e14151

COVID-19 after hematopoietic cell transplantation and chimeric antigen receptor (CAR)-T-cell therapy.

Kampouri E, Hill JA, Dioverti V

Transpl Infect Dis. 2023 Sep 28:e14144

The potential clinical value of pairing procalcitonin and lung ultrasonography to guide antibiotic therapy in patients with community-acquired pneumonia: a narrative review.

Bessat C, Boillat-Blanco N, Albrich WC

Expert Rev Respir Med. 2023 Sep 28:1-9

Atypical imaging patterns during lung invasive mould diseases: lessons for clinicians.

Casutt A, Lamoth F, Lortholary O, Prior JO, Tonglet A, Manuel O, Bergeron A, Beigelman-Aubry C

Eur Respir Rev. 2023 Sep 30;32(169)

Validation of sTREM-1 and IL-6 based algorithms for outcome prediction of COVID-19.

Van Singer M, Brahier T, Koch J, Hugli PO, Weckman AM, Zhong K, Kain TJ, Leligdowicz A, Bernasconi E, Ceschi A, Parolari S, Vuichard-Gysin D, Kain KC, Albrich WC, Boillat-Blanco N

BMC Infect Dis. 2023 Sep 26;23(1):630

Immune monitoring-guided vs fixed duration of antiviral prophylaxis against cytomegalovirus in solid-organ transplant recipients. A Multicenter, Randomized Clinical Trial.

Manuel O, Laager M, Hirzel C, Neofytos D, Walti LN, Hoenger G, Binet I, Schnyder A, Stampf S, Koller M, Mombelli M, Kim MJ, Hoffmann M, Koenig K, Hess C, Burgener AV, Cippà PE, Hübel K, Mueller TF, Sidler D, Dahdal S, Suter-Riniker F, Villard J, Zbinden A

Clin Infect Dis. 2023 Sep 22

Association of antimicrobial perioperative prophylaxis with cefuroxime plus metronidazole or amoxicillin/clavulanic acid and surgical site infections in colorectal surgery.

Stavropoulou E, Atkinson A, Eisenring MC, Fux CA, Marschall J, Senn L, Troillet N

Antimicrob Resist Infect Control. 2023 Sep 19;12(1):105

Humoral Responses Elicited after a Fifth Dose of SARS-CoV-2 mRNA Bivalent Vaccine.

Tauzin A, Beaudoin-Bussières G, Benlarbi M, Nayrac M, Bo Y, Gendron-Lepage G, Medjahed H, Perreault J, Gokool L, Arlotto P, Morrisseau C, Tremblay C, Kaufmann DE, Martel-Laferrière V, Levade I, Côté M, Bazin R, Finzi A

Viruses. 2023 Sep 15;15(9)

Spontaneous HIV expression during suppressive ART is associated with the magnitude and function of HIV-specific CD4(+) and CD8(+) T cells.

Dubé M, Tastet O, Dufour C, Sannier G, Brassard N, Delgado GG, Pagliuzza A, Richard C, Nayrac M, Routy JP, Prat A, Estes JD, Fromentin R, Chomont N, Kaufmann DE

Cell Host Microbe. 2023 Sep 13;31(9):1507-1522.e5

Prevalence of HIV-1 drug resistance mutations in proviral DNA in the Swiss HIV Cohort Study, a retrospective study from 1995 to 2018.

Jaha B, Schenkel CD, Jörimann L, Huber M, Zaheri M, Neumann K, Leemann C, Calmy A, Cavassini M, Kouyos RD, Günthard HF, Metzner KJ, Swiss HIV Cohort Study

J Antimicrob Chemother. 2023 Sep 5;78(9):2323-2334

A second update on mapping the human genetic architecture of COVID-19.

COVID-19 Host Genetics Initiative

Nature. 2023 Sep;621(7977):E7-E26

Update of recommendations for the management of COVID-19 in patients with haematological malignancies, haematopoietic cell transplantation and CAR T therapy, from the 2022 European Conference on Infections in Leukaemia (ECIL 9).

Cesaro S, Mikulska M, Hirsch HH, Styczynski J, Meylan S, Cordonnier C, Navarro D, von Lilienfeld-Toal M, Mehra V, Marchesi F, Besson C, Masculano RC, Beutel G, Einsele H, Maertens J, de la Camara R, ECIL 9, Ljungman P, Pagano L

Leukemia. 2023 Sep;37(9):1933-1938

Which trial do we need? A sequential multiple assignment randomized trial to determine the optimal Clostridioides difficile treatment sequence.

van Prehn J, van Werkhoven CH, Skinner AM, Guery B, Dubberke ER, Kuijper EJ

Clin Microbiol Infect. 2023 Aug 29

Swiss expert opinion: current approaches in faecal microbiota transplantation in daily practice.

Rossier L, Matter C, Burri E, Galperine T, Hrúz P, Juillerat P, Schoepfer A, Vavricka SR, Zahnd N, Décosterd N, Seibold F

Swiss Med Wkly. 2023 Aug 25;153:40100

Post-COVID symptoms are associated with endotypes reflecting poor inflammatory and hemostatic modulation.

An AY, Baghela A, Zhang PGY, Blimkie TM, Gauthier J, Kaufmann DE, Acton E, Lee AHY, Levesque RC, Hancock REW

Front Immunol. 2023;14:1243689

Antiretroviral drug exposure and response in obese and morbidly obese people with HIV: a study combining modelling and Swiss HIV Cohort data.

Berton M, Bettonte S, Stader F, Decosterd L, Tarr PE, Livio F, Cavassini M, Braun DL, Kusejko K, Hachfeld A, Bernasconi E, Calmy A, Schmid P, Battegay M, Marzolini C

Clin Infect Dis. 2023 Aug 21

Lung and sinus fungal infection imaging in immunocompromised patients.

Lamoth F, Prakash K, Beigelman-Aubry C, Baddley JW

Clin Microbiol Infect. 2023 Aug 20

Temporal changes in fecal microbiota of patients infected with COVID-19: a longitudinal cohort.

Galperine T, Choi Y, Pagani JL, Kritikos A, Papadimitriou-Olivgeris M, Méan M, Scherz V, Opota O, Greub G, Guery B, Bertelli C, RegCOVID Study Group

BMC Infect Dis. 2023 Aug 18;23(1):537

Immunogenicity of High-Dose vs. MF59-adjuvanted vs. Standard Influenza Vaccine in Solid Organ Transplant Recipients: The STOP-FLU trial.

Mombelli M, Neofytos D, Huynh-Do U, Sánchez-Céspedes J, Stampf S, Golshayan D, Dahdal S, Stirnimann G, Schnyder A, Garzoni C, Venzin RM, Magenta L, Schönenberger M, Walti L, Hirzel C, Munting A, Dickenmann M, Koller M, Aubert JD, Steiger J, Pascual M, Mue

Clin Infect Dis. 2023 Aug 16

Plasmatic HIV-1 soluble gp120 is associated with immune dysfunction and inflammation in ART-treated individuals with undetectable viremia.

Benlarbi M, Richard J, Bourassa C, Tolbert WD, Chartrand-Lefebvre C, Gendron-Lepage G, Sylla M, El-Far M, Messier-Peet M, Guertin C, Turcotte I, Fromentin R, Verly MM, Prévost J, Clark A, Mothes W, Kaufmann DE, Maldarelli F, Chomont N, Bégin P, Tremblay C

medRxiv. 2023 Aug 16

Sexual Behaviour and STI Incidence in Sexually Active MSM Living With HIV in Times of COVID-19.

Mugglin C, Hamusonde K, Salazar-Vizcaya L, Kusejko K, Nicca D, Haerry D, Braun DL, Stoeckle M, Kouyos R, Calmy A, Cavassini M, Cipriani M, Bernasconi E, Rauch A, Hachfeld A, Swiss HIV Cohort Study (SHCS)

Open Forum Infect Dis. 2023 Aug;10(8):ofad399

Mycobacterium tuberculosis infection associated immune perturbations correlate with antiretroviral immunity.

Tepekule B, Jörimann L, Schenkel CD, Opitz L, Tschumi J, Wolfensberger R, Neumann K, Kusejko K, Zeeb M, Boeck L, Kälin M, Notter J, Furrer H, Hoffmann M, Hirsch HH, Calmy A, Cavassini M, Labhardt ND, Bernasconi E, Metzner KJ, Braun DL, Günthard HF, Kouyos

bioRxiv. 2023 Jul 18

Portal-Mesenteric Suppurative Emphysematous Pylephlebitis: A Case Report.

Cheikh Youssef R, Jacques JM, Zahir S, Roger T, Landen S

Cureus. 2023 Jul;15(7):e41693

Risk of embolic events before and after antibiotic treatment initiation among patients with left-side infective endocarditis.

Papadimitriou-Olivgeris M, Guery B, Ianculescu N, Auberson D, Tozzi P, Kirsch M, Monney P

Infection. 2023 Jul 4

Clinically relevant bidirectional drug-drug interaction between midostaurin and voriconazole.

Haefliger D, Marzolini C, Lamoth F, Pabst T, Buclin T, Livio F

Br J Clin Pharmacol. 2023 Jul;89(7):2304-2308

Cytomegalovirus in donors for fecal microbiota transplantation, the phantom menace?

Galpérine T, Engelmann I, Hantz S, Postil D, Dewilde A, Deplanque D, Martin R, Labreuche J, Lazrek M, Somers S, Ribot E, Alain S

PLoS One. 2023;18(6):e0287847

Performance of the beta-glucan test for the diagnosis of invasive fusariosis and scedosporiosis: a meta-analysis.

Lamoth F, Nucci M, Fernandez-Cruz A, Azoulay E, Lanternier F, Bremerich J, Einsele H, Johnson E, Lehrnbecher T, Mercier T, Porto L, Verweij PE, White L, Maertens J, Alanio A, 9th European Conference on Infections in Leukemia (ECIL-9)

Med Mycol. 2023 Jun 28

Sepsis awareness and knowledge amongst nurses, physicians and paramedics of a tertiary care center in Switzerland: A survey-based cross-sectional study.

Regina J, Le Pogam MA, Niemi T, Akrour R, Pepe S, Lehn I, Wasserfallen JB, Calandra T, Meylan S

PLoS One. 2023;18(6):e0285151

Hear My Voice: involving patients in Clostridioides difficile infection research.

Strawbridge J, Heritage J, Krutova M, Guery B, Davies K, Fitzpatrick F, Freeman J

Clin Microbiol Infect. 2023 Jun 27

Barriers and facilitators to implementation of point-of-care lung ultrasonography in a tertiary centre in Benin: a qualitative study among general physicians and pneumologists.

Suttels V, Guedes Da Costa S, Garcia E, Brahier T, Hartley MA, Agodokpessi G, Wachinou P, Fasseur F, Boillat-Blanco N

BMJ Open. 2023 Jun 26;13(6):e070765

Viral-associated Pulmonary Aspergillosis: Have We Finally Overcome the Debate of Colonization Versus Infection?

Albrich WC, Lamoth F

Am J Respir Crit Care Med. 2023 Jun 22

'Which trial do we need? Culture of preservation fluid in abdominal-organ transplant recipients' Author's reply.

Manuel O, van den Bogaart L, Mueller NJ, Neofytos D

Clin Microbiol Infect. 2023 Jun 19

Predicting Optimal Antimalarial Drug Combinations from a Standardized Plasmodium falciparum Humanized Mouse Model.

Demarta-Gatsi C, Andenmatten N, Jiménez-Díaz MB, Gobeau N, Cherkaoui-Rabti MH, Fuchs A, Díaz P, Berja S, Sánchez R, Gómez H, Ruiz E, Sainz P, Salazar E, Gil-Merino R, Mendoza LM, Eguizabal C, Leroy D, Moehrle JJ, Tornesi B, Angulo-Barturen I

Antimicrob Agents Chemother. 2023 Jun 15;67(6):e0157422

Impact of thoracoabdominal imaging on diagnosis and management in patients with suspected infective endocarditis.

Papadimitriou-Olivgeris M, Monney P, Rotzinger DC, Kamani CH, Fahrni G, Prior JO, Ianculescu N, Messaoudi Y, Tozzi P, Kirsch M, Guery B

Eur J Intern Med. 2023 Jun 15

An Unusual Cause of Severe Granulomatous Hepatitis and Jaundice.

Coukos A, Uldry E, Meylan S, Schmidt S, Fasquelle F, Sempoux C, Fraga M

Am J Gastroenterol. 2023 Jun 13

Population pharmacokinetic modelling to characterize the effect of chronic kidney disease on tenofovir exposure after tenofovir alafenamide administration.

Thoueille P, Alves Saldanha S, Desfontaine V, Kusejko K, Courlet P, Andre P, Cavassini M, Decosterd LA, Buclin T, Guidi M, Swiss HIV Cohort Study

J Antimicrob Chemother. 2023 Jun 1;78(6):1433-1443

Viral suppression and retention in HIV care during the postpartum period among women living with HIV: a longitudinal multicenter cohort study.

Paioni P, Aebi-Popp K, Martinez de Tejada B, Rudin C, Bernasconi E, Braun DL, Kouyos R, Wagner N, Crisinel PA, Güsewell S, Darling KEA, Duppenthaler A, Baumann M, Polli C, Fischer T, Kahlert CR, Swiss HIV Cohort Study (SHCS) and the Swiss Mother and Child

Lancet Reg Health Eur. 2023 Aug;31:100656

Understanding the decline of incident, active tuberculosis in people with HIV in Switzerland.

Zeeb M, Tepekule B, Kusejko K, Reiber C, Kälin M, Bartl L, Notter J, Furrer H, Hoffmann M, Hirsch HH, Calmy A, Cavassini M, Labhardt ND, Bernasconi E, Braun DL, Günthard HF, Kouyos RD, Nemeth J, Swiss HIV Cohort Study

Clin Infect Dis. 2023 May 31

Regulation of inflammation and protection against invasive pneumococcal infection by the long pentraxin PTX3.

Porte R, Silva-Gomes R, Theroude C, Parente R, Asgari F, Sironi M, Pasqualini F, Valentino S, Asselta R, Recordati C, Monari MN, Doni A, Inforzato A, Rodriguez-Gallego C, Obando I, Colino E, Bottazzi B, Mantovani A

Elife. 2023 May 24;12

The role of early defervescence in ruling out infective endocarditis: a cohort study.

Stavropoulou E, Guery B, Ianculescu N, Tozzi P, Kirsch M, Monney P, Papadimitriou-Olivgeris M

Clin Microbiol Infect. 2023 May 23

Exploration of the Acceptance of the Use of Procalcitonin Point-of-Care Testing and Lung Ultrasonography by General Practitioners to Decide on Antibiotic Prescriptions for Lower Respiratory Infections: A Qualitative Study.

Geis D, Canova N, Lhopitallier L, Kronenberg A, Meuwly JY, Senn N, Mueller Y, Fasseur F, Boillat-Blanco N

BMJ Open. 2023 May 11;13(5):e063922

Novel Approaches in the Management of Mucormycosis.

Lamoth F

Curr Fungal Infect Rep. 2023 May 8:1-10

Bacteremia During the First Year After Solid Organ Transplantation: An Epidemiological Update.

Neofytos D, Stampf S, Hoessly LD, D'Asaro M, Tang GN, Boggian K, Hirzel C, Khanna N, Manuel O, Mueller NJ, Van Delden C, Swiss Transplant Cohort Study

Open Forum Infect Dis. 2023 Jun;10(6):ofad247

Beyond Undetectable: Modeling the Clinical Benefit of Improved Antiretroviral Adherence in Persons With Human Immunodeficiency Virus With Virologic Suppression.

Castillo-Mancilla JR, Morrow M, Hunt PW, Schnittman SR, Phillips AN, Baker JV, Haberer JE, Janeiro MJ, Aragao F, Cohen C, Musinguzi N, Brown TT, Cavassini M, Glass TR, Serrano-Villar S, Mawhinney S, Siedner M

Open Forum Infect Dis. 2023 May;10(5):ofad230

Epigenetic ageing accelerates before antiretroviral therapy and decelerates after viral suppression in people with HIV in Switzerland: a longitudinal study over 17 years.

Schoepf IC, Esteban-Cantos A, Thorball CW, Rodés B, Reiss P, Rodríguez-Centeno J, Riebensahm C, Braun DL, Marzolini C, Seneghini M, Bernasconi E, Cavassini M, Buvelot H, Thurnheer MC, Kouyos RD, Fellay J, Günthard HF, Arribas JR, Ledergerber B, Tarr PE, S

Lancet Healthy Longev. 2023 May;4(5):e211-e218

The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata.

Neves A, Walther D, Martin-Campos T, Barbie V, Bertelli C, Blanc D, Bouchet G, Erard F, Greub G, Hirsch HH, Huber M, Kaiser L, Leib SL, Leuzinger K, Lazarevic V, Mäusezahl M, Molina J, Neher RA, Perreten V, Ramette A, Roloff T, Schrenzel J, Seth-Smith HMB

Microb Genom. 2023 May;9(5)

Effect of SLCO1B1 c.521T>C polymorphism on the lipid response to statins in people living with HIV on a boosted protease inhibitor containing regimen.

Marzolini C, Cavassini M, Braun DL, Hachfeld A, Bernasconi E, Calmy A, Schmid P, Battegay M, Elzi L, Swiss HIV Cohort Study

Br J Clin Pharmacol. 2023 Apr 26

[Multidisciplinary assessment and management of neurocognitive complaints in people living with HIV].

Damas J, Berney A, Bieler-Aeschlimann M, Cavassini M, Du Pasquier R

Rev Med Suisse. 2023 Apr 26;19(824):797-799

Circulating proteins to predict COVID-19 severity.

Su CY, Zhou S, Gonzalez-Kozlova E, Butler-Laporte G, Brunet-Ratnasingham E, Nakanishi T, Jeon W, Morrison DR, Laurent L, Afilalo J, Afilalo M, Henry D, Chen Y, Carrasco-Zanini J, Farjoun Y, Pietzner M, Kimchi N, Afrasiabi Z, Rezk N, Bouab M, Petitjean L,

Sci Rep. 2023 Apr 17;13(1):6236

Dry alginate beads for fecal microbiota transplantation: From model strains to fecal samples.

Rakotonirina A, Galperine T, Audry M, Kroemer M, Baliff A, Carrez L, Sadeghipour F, Schrenzel J, Guery B, Allémann E

Int J Pharm. 2023 Apr 17;639:122961

[2023 update on alveolar echinococcosis].

Gauthiez E, Uldry E, Coste AT, Prior J, Cavassini M, Munting A

Rev Med Suisse. 2023 Apr 12;19(822):708-712

Solid organ transplantation: Need of a new paradigm integrating biological sex.

Rello J, Manuel O, Pont T

Eur J Intern Med. 2023 Apr 12

Le retour d’une vieille compagne.

Kaiser L, Kaufmann D

Rev Med Suisse. 2023 Apr 12;19(822):699-700

Editorial: Beneficial and pathological roles of myeloid cells during COVID-19.

Sharma L, Sengupta S, Roger T

Front Immunol. 2023;14:1194826

Long-Term Consequences of COVID-19: A 1-Year Analysis.

Bamps L, Armenti JP, Bojan M, Grandbastien B, von Garnier C, Du Pasquier R, Desgranges F, Papadimitriou-Olivgeris M, Alberio L, Preisig M, Schwitter J, Guery B, The RegCOVID Study Group

J Clin Med. 2023 Apr 3;12(7)

Vaccine-Preventable Infections Among Solid Organ Transplant Recipients in Switzerland.

Walti LN, Mugglin C, Mombelli M, Manuel O, Hirsch HH, Khanna N, Mueller NJ, Berger C, Boggian K, Garzoni C, Neofytos D, van Delden C, Mäusezahl M, Hirzel C, Swiss Transplant Cohort Study

JAMA Netw Open. 2023 Apr 3;6(4):e2310687

Successful implementation of new Swiss recommendations on breastfeeding of infants born to women living with HIV.

Crisinel PA, Kusejko K, Kahlert CR, Wagner N, Beyer LS, De Tejada BM, Hösli I, Vasconcelos MK, Baumann M, Darling K, Duppenthaler A, Rauch A, Paioni P, Aebi-Popp K

Eur J Obstet Gynecol Reprod Biol. 2023 Apr;283:86-89

Role of cerebral imaging on diagnosis and management in patients with suspected infective endocarditis.

Papadimitriou-Olivgeris M, Guery B, Ianculescu N, Dunet V, Messaoudi Y, Pistocchi S, Tozzi P, Kirsch M, Monney P

Clin Infect Dis. 2023 Mar 31

Which trial do we need? Culture of preservation fluid in abdominal organ transplant recipients.

Manuel O, van den Bogaart L, Mueller NJ, Neofytos D

Clin Microbiol Infect. 2023 Mar 17

Temsavir blocks the immunomodulatory activities of HIV-1 soluble gp120.

Richard J, Prévost J, Bourassa C, Brassard N, Boutin M, Benlarbi M, Goyette G, Medjahed H, Gendron-Lepage G, Gaudette F, Chen HC, Tolbert WD, Smith AB 3rd, Pazgier M, Dubé M, Clark A, Mothes W, Kaufmann DE, Finzi A

Cell Chem Biol. 2023 Mar 17

Cerebrospinal fluid HIV-1 escape in patients with neurocognitive symptoms: pooled data from a neuro-HIV platform and the NAMACO study.

Filippidis P, Damas J, Viala B, Assal F, Tshikung ON, Tarr P, Derfuss T, Oberholzer M, Jelcic I, Hundsberger T, Sacco L, Cavassini M, Du Pasquier R, Darling KEA, and the NAMACO study group, Swiss HIV Cohort Study

J Acquir Immune Defic Syndr. 2023 Mar 15

On-demand, hospital-based, severe acute respiratory coronavirus virus 2 (SARS-CoV-2) genomic epidemiology to support nosocomial outbreak investigations: A prospective molecular epidemiology study.

Benoit P, Jolicoeur G, Point F, Soucy C, Normand K, Morency-Potvin P, Gagnon S, Kaufmann DE, Tremblay C, Coutlée F, Harrigan PR, Hardy I, Smith M, Savard P, Grandjean Lapierre S

Antimicrob Steward Healthc Epidemiol. 2023;3(1):e45

One for all, all for one: neuro-HIV multidisciplinary platform for the assessment and management of neurocognitive complaints in people living with HIV.

Damas J, Darling KEA, Bidlingmeyer P, Nadin-Debluë I, Bieler M, Vollino L, Sokolov AA, Berney A, Maccaferri G, Filippidis P, Viala B, Granziera C, Dunet V, Du Pasquier R, Cavassini M

HIV Med. 2023 Mar 8

Prospective compliance assessment of surgical site infection prevention measures in colorectal surgery.

Deslarzes P, Jurt J, Hübner M, Hahnloser D, Clerc D, Senn L, Demartines N, Grass F

BJS Open. 2023 Mar 7;7(2)

Rectal shedding of monkeypox virus in a patient coinfected with Chlamydia trachomatis and Neisseria gonorrhoeae: a case report.

Desgranges F, Glampedakis E, Christinet V, Encarnação S, Fernandes C, Greub G, Opota O, Cavassini M

J Med Case Rep. 2023 Mar 6;17(1):94

Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1.

Balakrishna S, Loosli T, Zaheri M, Frischknecht P, Huber M, Kusejko K, Yerly S, Leuzinger K, Perreau M, Ramette A, Wymant C, Fraser C, Kellam P, Gall A, Hirsch HH, Stoeckle M, Rauch A, Cavassini M, Bernasconi E, Notter J, Calmy A, Günthard HF, Metzner KJ,

J Antimicrob Chemother. 2023 Mar 2;78(3):656-664

Pulse Oximetry as an Aid to Rule Out Pneumonia among Patients with a Lower Respiratory Tract Infection in Primary Care.

Fischer C, Knüsli J, Lhopitallier L, Tenisch E, Meuwly MG, Douek P, Meuwly JY, D'Acremont V, Kronenberg A, Locatelli I, Mueller Y, Senn N, Boillat-Blanco N

Antibiotics (Basel). 2023 Mar 2;12(3)

The effect of sex inequality on solid organ transplantation: A systematic review and meta-analysis.

Tejada S, Martinez-Reviejo R, Nogueira TA, Gómez A, Pont T, Liao X, Zhang Z, Manuel O, Rello J

Eur J Intern Med. 2023 Mar;109:58-67

Predictors of mortality of Staphylococcus aureus bacteremia among patients hospitalized in a Swiss University Hospital and the role of early source control; a retrospective cohort study.

Papadimitriou-Olivgeris M, Caruana G, Senn L, Guery B

Eur J Clin Microbiol Infect Dis. 2023 Mar;42(3):347-357

Clinical significance of concomitant bacteriuria in patients with Staphylococcus aureus bacteraemia.

Papadimitriou-Olivgeris M, Jacot D, Senn L, Guery B

Eur J Clin Microbiol Infect Dis. 2023 Mar;42(3):379-382

Novel Therapeutic Approaches to Invasive Candidiasis: Considerations for the Clinician.

Lamoth F

Infect Drug Resist. 2023;16:1087-1097

Swiss Sepsis National Action Plan: A coordinated national action plan to stop sepsis-related preventable deaths and to improve the support of people affected by sepsis in Switzerland.

Schlapbach LJ, Zimmermann EA, Meylan S, Stocker M, Suter PM, Jakob SM, National Action Plan Working Group OBOTSS

Front Med (Lausanne). 2023;10:1114546

Should we treat Blastocystis sp.? A double-blind placebo-controlled randomized pilot trial.

Cobuccio LG, Laurent M, Gardiol C, Wampfler R, Poppert S, Senn N, Eperon G, Genton B, Locatelli I, de Vallière S

J Travel Med. 2023 Feb 18;30(1)

A Functional Polymorphism in IL-1B Is Associated With Immune Reconstitution Inflammatory Syndrome of Chronic Disseminated Candidiasis.

Rammaert B, Bochud PY, Brunel AS, Wojtowicz A, Candon S, Gallego Hernanz MP, Lortholary O

Open Forum Infect Dis. 2023 Mar;10(3):ofad078

Overruling of Procalcitonin-Guided Antibiotics for Lower Respiratory Tract Infections in Primary Care: Ancillary Study of a Randomized Controlled Trial.

Knüsli J, Lhopitallier L, Kronenberg A, Meuwly JY, Opota O, Perrenoud MA, Page MA, Kain KC, Mamin A, D'Acremont V, Senn N, Mueller Y, Locatelli I, Boillat-Blanco N

Antibiotics (Basel). 2023 Feb 12;12(2)

A third SARS-CoV-2 mRNA vaccine dose in people receiving hemodialysis overcomes B cell defects but elicits a skewed CD4(+) T cell profile.

Sannier G, Nicolas A, Dubé M, Marchitto L, Nayrac M, Tastet O, Chatterjee D, Tauzin A, Lima-Barbosa R, Laporte M, Cloutier R, Sreng Flores AM, Boutin M, Gong SY, Benlarbi M, Ding S, Bourassa C, Gendron-Lepage G, Medjahed H, Goyette G, Brassard N, Delgado

Cell Rep Med. 2023 Feb 7:100955

Comparison of five different risk scores to predict incident type 2 diabetes in the Swiss HIV cohort study.

Blondet F, Kraege V, Matthias C, Fernandez JD, Vollenweider P, Wandeler G, Hoffman M, Calmy A, Stoeckle M, Bernasconi E, Hasse B, Marques-Vidal P, Mean M, Swiss HIV Cohort Study

AIDS. 2023 Feb 3

Preemptive therapy versus universal prophylaxis: Time for reconciliation?

Kampouri E, Manuel O

Transpl Infect Dis. 2023 Feb 3:e14014

[News in HIV infection, long-acting injectable treatments].

Nawej Tshikung O, Segeral O, Cavassini M, Calmy A

Rev Med Suisse. 2023 Feb 1;19(812):243-249

Outcomes of SARS-CoV-2 infection among lung transplant recipients: A single center retrospective study.

Casutt A, Papadimitriou-Olivgeris M, Ioakeim F, Aubert JD, Manuel O, Koutsokera A

Transpl Infect Dis. 2023 Feb;25(1):e14007

Author Correction: Transmission of trained immunity and heterologous resistance to infections across generations.

Katzmarski N, Domínguez-Andrés J, Cirovic B, Renieris G, Ciarlo E, Le Roy D, Lepikhov K, Kattler K, Gasparoni G, Händler K, Theis H, Beyer M, van der Meer JWM, Joosten LAB, Walter J, Schultze JL, Roger T, Giamarellos-Bourboulis EJ, Schlitzer A, Netea MG

Nat Immunol. 2023 Feb;24(2):371-372

Faecal microbiota transplantation for first and second episodes of Clostridioides difficile infection.

Krutova M, Davis K, Guery B, Barbut F

Lancet Gastroenterol Hepatol. 2023 Feb;8(2):111-112

A narrative review of the intermediate category of the antimicrobial susceptibility test: relation with dosing and possible impact on antimicrobial stewardship.

Yusuf E, Zeitlinger M, Meylan S

J Antimicrob Chemother. 2023 Feb 1;78(2):338-345

Spike recognition and neutralization of SARS-CoV-2 Omicron subvariants elicited after the third dose of mRNA vaccine.

Tauzin A, Nicolas A, Ding S, Benlarbi M, Medjahed H, Chatterjee D, Dionne K, Gong SY, Gendron-Lepage G, Bo Y, Perreault J, Goyette G, Gokool L, Arlotto P, Morrisseau C, Tremblay C, Martel-Laferrière V, De Serres G, Levade I, Kaufmann DE, Côté M, Bazin R,

Cell Rep. 2023 Jan 31;42(1):111998

Leukocyte Count and Coronary Artery Disease Events in People with HIV: A Longitudinal Study.

Avery EF, Kleynhans JN, Ledergerber B, Schoepf IC, Thorball CW, Kootstra NA, Reiss P, Ryom L, Braun DL, Thurnheer MC, Marzolini C, Seneghini M, Bernasconi E, Cavassini M, Buvelot H, Kouyos RD, Fellay J, Günthard HF, Tarr PE, Swiss HIV Cohort Study

Clin Infect Dis. 2023 Jan 23

Humoral Responses against BQ.1.1 Elicited after Breakthrough Infection and SARS-CoV-2 mRNA Vaccination.

Tauzin A, Benlarbi M, Medjahed H, Grégoire Y, Perreault J, Gendron-Lepage G, Gokool L, Morrisseau C, Arlotto P, Tremblay C, Kaufmann DE, Martel-Laferrière V, Levade I, Côté M, De Serres G, Bazin R, Finzi A

Vaccines (Basel). 2023 Jan 21;11(2)

An extended SARS-CoV-2 mRNA vaccine prime-boost interval enhances B cell immunity with limited impact on T cells.

Nicolas A, Sannier G, Dubé M, Nayrac M, Tauzin A, Painter MM, Goel RR, Laporte M, Gendron-Lepage G, Medjahed H, Williams JC, Brassard N, Niessl J, Gokool L, Morrisseau C, Arlotto P, Tremblay C, Martel-Laferrière V, Finzi A, Greenplate AR, Wherry EJ, Kaufm

iScience. 2023 Jan 20;26(1):105904

Alveolar echinococcosis in solid organ transplant recipients: a case series from two national cohorts.

Marquis B, Demonmerot F, Richou C, Thiéfin G, Millon L, Wallon M, Vuitton DA, Grall-Jezequel A, Grenouillet F, Epaulard O, Gervais P, Manuel O, Bresson-Hadni S, Swiss Transplant Cohort Study, FrancEchino Network

Parasite. 2023;30:9

Antibody-induced erythrophagocyte reprogramming of Kupffer cells prevents anti-CD40 cancer immunotherapy-associated liver toxicity.

Pfefferlé M, Dubach IL, Buzzi RM, Dürst E, Schulthess-Lutz N, Baselgia L, Hansen K, Imhof L, Koernig S, Le Roy D, Roger T, Humar R, Schaer DJ, Vallelian F

J Immunother Cancer. 2023 Jan;11(1)

Prediction of DNA rejoining kinetics and cell survival after proton irradiation for V79 cells using Geant4-DNA.

Sakata D, Hirayama R, Shin WG, Belli M, Tabocchini MA, Stewart RD, Belov O, Bernal MA, Bordage MC, Brown JMC, Dordevic M, Emfietzoglou D, Francis Z, Guatelli S, Inaniwa T, Ivanchenko V, Karamitros M, Kyriakou I, Lampe N, Li Z, Meylan S, Michelet C, Niemin

Phys Med. 2023 Jan;105:102508

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 Last updated on 31/05/2018 at 19:52